Merge pull request #3502 from CliMA/ck/cleanup_log

More reproducibility infra fixes

docs/Manifest.toml

@@ -240,13 +240,13 @@ weakdeps = ["BandedMatrices"]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Lz4_jll", "Zlib_jll", "Zstd_jll"]
 git-tree-sha1 = "ef12cdd1c7fb7e1dfd6fa8fd60d4db6bc61d2f23"
 uuid = "0b7ba130-8d10-5ba8-a3d6-c5182647fed9"
-version = "1.21.6+0"
+version = "1.21.6+2"
 
 [[deps.Bzip2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1"
 uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
-version = "1.0.8+2"
+version = "1.0.8+4"
 
 [[deps.CEnum]]
 git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
@@ -300,9 +300,9 @@ version = "1.18.2+1"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra"]
-git-tree-sha1 = "3e4b134270b372f2ed4d4d0e936aabaefc1802bc"
+git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.25.0"
+version = "1.25.1"
 weakdeps = ["SparseArrays"]
 
     [deps.ChainRulesCore.extensions]
@@ -701,7 +701,7 @@ version = "2.2.5"
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "e51db81749b0777b2147fbe7b783ee79045b8e99"
 uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
-version = "2.6.4+1"
+version = "2.6.4+3"
 
 [[deps.ExprTools]]
 git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
@@ -735,7 +735,7 @@ version = "1.8.0"
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "4d81ed14783ec49ce9f2e168208a12ce1815aa25"
 uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a"
-version = "3.3.10+1"
+version = "3.3.10+3"
 
 [[deps.FastBroadcast]]
 deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"]
@@ -928,9 +928,9 @@ version = "0.21.0+0"
 
 [[deps.Giflib_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "0224cce99284d997f6880a42ef715a37c99338d1"
+git-tree-sha1 = "6570366d757b50fabae9f4315ad74d2e40c0560a"
 uuid = "59f7168a-df46-5410-90c8-f2779963d0ec"
-version = "5.2.2+0"
+version = "5.2.3+0"
 
 [[deps.GilbertCurves]]
 git-tree-sha1 = "3e076ca96e34a47e98a46657b2bec2655a366d80"
@@ -1012,7 +1012,7 @@ version = "8.5.0+0"
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "50aedf345a709ab75872f80a2779568dc0bb461b"
 uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8"
-version = "2.11.2+1"
+version = "2.11.2+3"
 
 [[deps.HypergeometricFunctions]]
 deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
@@ -1157,9 +1157,9 @@ version = "1.0.0"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
-git-tree-sha1 = "be3dc50a92e5a386872a493a10050136d4703f9b"
+git-tree-sha1 = "a007feb38b422fbdab534406aeca1b86823cb4d6"
 uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
-version = "1.6.1"
+version = "1.7.0"
 
 [[deps.JSON]]
 deps = ["Dates", "Mmap", "Parsers", "Unicode"]
@@ -1193,9 +1193,9 @@ version = "0.1.5"
 
 [[deps.JpegTurbo_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "ef10afc9f4b942bcd75f4c3bc9d9e8d802944c23"
+git-tree-sha1 = "eac1206917768cb54957c65a615460d87b455fc1"
 uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
-version = "3.1.0+0"
+version = "3.1.1+0"
 
 [[deps.JuliaNVTXCallbacks_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1245,9 +1245,9 @@ version = "3.100.2+0"
 
 [[deps.LERC_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "4ec1e8fac04150b570e315baaa68950e368a803d"
+git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3"
 uuid = "88015f11-f218-50d7-93a8-a6af411a945d"
-version = "4.0.0+1"
+version = "4.0.1+0"
 
 [[deps.LLVMOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1268,7 +1268,7 @@ weakdeps = ["Serialization"]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "854a9c268c43b77b0a27f22d7fab8d33cdb3a731"
 uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
-version = "2.10.2+1"
+version = "2.10.2+3"
 
 [[deps.LaTeXStrings]]
 git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c"
@@ -1342,9 +1342,9 @@ version = "1.7.0+0"
 
 [[deps.Libgpg_error_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "a7f43994b47130e4f491c3b2dbe78fe9e2aed2b3"
+git-tree-sha1 = "df37206100d39f79b3376afb6b9cee4970041c61"
 uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8"
-version = "1.51.0+0"
+version = "1.51.1+0"
 
 [[deps.Libiconv_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1356,19 +1356,19 @@ version = "1.17.0+1"
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "84eef7acd508ee5b3e956a2ae51b05024181dee0"
 uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
-version = "2.40.2+0"
+version = "2.40.2+2"
 
 [[deps.Libtiff_jll]]
 deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]
-git-tree-sha1 = "b404131d06f7886402758c9ce2214b636eb4d54a"
+git-tree-sha1 = "4ab7581296671007fc33f07a721631b8855f4b1d"
 uuid = "89763e89-9b03-5906-acba-b20f662cd828"
-version = "4.7.0+0"
+version = "4.7.1+0"
 
 [[deps.Libuuid_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "edbf5309f9ddf1cab25afc344b1e8150b7c832f9"
 uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700"
-version = "2.40.2+0"
+version = "2.40.2+2"
 
 [[deps.LinearAlgebra]]
 deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
@@ -1411,9 +1411,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[deps.Lz4_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "abf88ff67f4fd89839efcae2f4c39cbc4ecd0846"
+git-tree-sha1 = "191686b1ac1ea9c89fc52e996ad15d1d241d1e33"
 uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
-version = "1.10.0+1"
+version = "1.10.1+0"
 
 [[deps.MKL_jll]]
 deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"]
@@ -1442,7 +1442,7 @@ version = "0.1.11"
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
 git-tree-sha1 = "70e830dab5d0775183c99fc75e4c24c614ed7142"
 uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748"
-version = "5.5.1+0"
+version = "5.5.1+2"
 
 [[deps.MacroTools]]
 deps = ["Markdown", "Random"]
@@ -1627,13 +1627,13 @@ version = "5.0.6+0"
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "3.0.15+1"
+version = "3.0.15+3"
 
 [[deps.OpenSpecFun_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335"
 uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
-version = "0.5.5+0"
+version = "0.5.6+0"
 
 [[deps.Opus_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1942,9 +1942,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
-git-tree-sha1 = "fd0794f59136050f4734f7af7818fec2f82bdcfc"
+git-tree-sha1 = "3e5a9c5d6432b77a271646b4ada2573f239ac5c4"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.69.0"
+version = "2.70.0"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -2091,9 +2091,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"]
 
 [[deps.StaticArrays]]
 deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
-git-tree-sha1 = "7c01731da8ab6d3094c4d44c9057b00932459255"
+git-tree-sha1 = "47091a0340a675c738b1304b58161f3b0839d454"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.9.9"
+version = "1.9.10"
 weakdeps = ["ChainRulesCore", "Statistics"]
 
     [deps.StaticArrays.extensions]
@@ -2325,9 +2325,9 @@ version = "0.4.1"
 
 [[deps.Unitful]]
 deps = ["Dates", "LinearAlgebra", "Random"]
-git-tree-sha1 = "01915bfcd62be15329c9a07235447a89d588327c"
+git-tree-sha1 = "c0667a8e676c53d390a09dc6870b3d8d6650e2bf"
 uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
-version = "1.21.1"
+version = "1.22.0"
 weakdeps = ["ConstructionBase", "InverseFunctions"]
 
     [deps.Unitful.extensions]
@@ -2392,33 +2392,33 @@ version = "1.1.42+0"
 
 [[deps.XZ_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "15e637a697345f6743674f1322beefbc5dcd5cfc"
+git-tree-sha1 = "beef98d5aad604d9e7d60b2ece5181f7888e2fd6"
 uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
-version = "5.6.3+0"
+version = "5.6.4+0"
 
 [[deps.Xorg_libX11_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
 git-tree-sha1 = "9dafcee1d24c4f024e7edc92603cedba72118283"
 uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc"
-version = "1.8.6+1"
+version = "1.8.6+3"
 
 [[deps.Xorg_libXau_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "2b0e27d52ec9d8d483e2ca0b72b3cb1a8df5c27a"
 uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec"
-version = "1.0.11+1"
+version = "1.0.11+3"
 
 [[deps.Xorg_libXdmcp_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "02054ee01980c90297412e4c809c8694d7323af3"
 uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05"
-version = "1.1.4+1"
+version = "1.1.4+3"
 
 [[deps.Xorg_libXext_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"]
 git-tree-sha1 = "d7155fea91a4123ef59f42c4afb5ab3b4ca95058"
 uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3"
-version = "1.3.6+1"
+version = "1.3.6+3"
 
 [[deps.Xorg_libXrender_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"]
@@ -2430,19 +2430,19 @@ version = "0.9.11+1"
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "fee57a273563e273f0f53275101cd41a8153517a"
 uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74"
-version = "0.1.1+1"
+version = "0.1.1+3"
 
 [[deps.Xorg_libxcb_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"]
 git-tree-sha1 = "1a74296303b6524a0472a8cb12d3d87a78eb3612"
 uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b"
-version = "1.17.0+1"
+version = "1.17.0+3"
 
 [[deps.Xorg_xtrans_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "b9ead2d2bdb27330545eb14234a2e300da61232e"
 uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
-version = "1.5.0+1"
+version = "1.5.0+3"
 
 [[deps.YAML]]
 deps = ["Base64", "Dates", "Printf", "StringEncodings"]
@@ -2457,9 +2457,9 @@ version = "1.2.13+1"
 
 [[deps.Zstd_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b"
+git-tree-sha1 = "622cf78670d067c738667aaa96c553430b65e269"
 uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
-version = "1.5.6+1"
+version = "1.5.7+0"
 
 [[deps.isoband_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -2471,13 +2471,13 @@ version = "0.2.3+0"
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997"
 uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0"
-version = "1.1.2+0"
+version = "1.1.2+2"
 
 [[deps.libaom_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d"
+git-tree-sha1 = "522c1df09d05a71785765d19c9524661234738e9"
 uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b"
-version = "3.9.0+0"
+version = "3.11.0+0"
 
 [[deps.libass_jll]]
 deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"]
@@ -2498,15 +2498,15 @@ version = "2.0.3+0"
 
 [[deps.libpng_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
-git-tree-sha1 = "b70c870239dc3d7bc094eb2d6be9b73d27bef280"
+git-tree-sha1 = "b7bfd3ab9d2c58c3829684142f5804e4c6499abc"
 uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
-version = "1.6.44+0"
+version = "1.6.45+0"
 
 [[deps.libsixel_jll]]
-deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"]
-git-tree-sha1 = "7dfa0fd9c783d3d0cc43ea1af53d69ba45c447df"
+deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"]
+git-tree-sha1 = "1e53ffe8941ee486739f3c0cf11208c26637becd"
 uuid = "075b6546-f08a-558a-be8f-8157d0f608a5"
-version = "1.10.3+1"
+version = "1.10.4+0"
 
 [[deps.libvorbis_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
@@ -2516,15 +2516,15 @@ version = "1.3.7+2"
 
 [[deps.libwebp_jll]]
 deps = ["Artifacts", "Giflib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Libtiff_jll", "libpng_jll"]
-git-tree-sha1 = "ccbb625a89ec6195856a50aa2b668a5c08712c94"
+git-tree-sha1 = "d2408cac540942921e7bd77272c32e58c33d8a77"
 uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2"
-version = "1.4.0+0"
+version = "1.5.0+0"
 
 [[deps.libzip_jll]]
 deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "OpenSSL_jll", "XZ_jll", "Zlib_jll", "Zstd_jll"]
 git-tree-sha1 = "e797fa066eba69f4c0585ffbd81bc780b5118ce2"
 uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1"
-version = "1.11.2+0"
+version = "1.11.2+2"
 
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -2544,9 +2544,9 @@ version = "17.4.0+2"
 
 [[deps.x264_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "35976a1216d6c066ea32cba2150c4fa682b276fc"
+git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7"
 uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
-version = "10164.0.0+0"
+version = "10164.0.1+0"
 
 [[deps.x265_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]