Issue #560 Remove setup.cfg (#707)

In this commit all the contents of setup.cfg has been moved to the
pyproject.toml file.
Flake8 doesn't support the pyproject.toml format, therefor it has been
relaced with ruff.

docs/developing.rst

@@ -233,4 +233,4 @@ At this point, everything should be ready to run the tests on the Docker image.
 .. _embedded: https://sphinx-gallery.github.io/stable/syntax.html#embedding-rst
 .. _IPython Sphinx Directives: https://ipython.readthedocs.io/en/stable/sphinxext.html
 .. _isort: https://github.com/PyCQA/isort
-.. _flake8: https://github.com/PyCQA/flake8
+.. _ruff: https://github.com/astral-sh/ruff

imod-environment-dev.yml

@@ -4,7 +4,7 @@ channels:
 
 dependencies:
     - black
-    - flake8
+    - ruff
     - hypothesis
     - isort
     - mypy

pyproject.toml

@@ -2,13 +2,136 @@
 requires = ["setuptools>=42", "wheel"]
 build-backend = "setuptools.build_meta"
 
+[project]
+name = "imod"
+version = "0.15.0"
+requires-python = ">=3.10"
+authors = [
+    { name = "Deltares", email = "[email protected]" },
+]
+maintainers = [
+    { name = "Deltares", email = "[email protected]" }
+]
+description = "Make massive MODFLOW models!"
+readme = "README.rst"
+license = { file = "LICENSE" }
+keywords = ["imod", "modflow", "groundwater modeling"]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Science/Research",
+    "Topic :: Scientific/Engineering :: Hydrology",
+    "License :: OSI Approved :: MIT License",
+    "Operating System :: OS Independent",
+    "Programming Language :: Python",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: Implementation :: CPython",
+    "opic :: Scientific/Engineering"
+]
+dependencies = [
+    "affine",
+    "cftime >=1",
+    "dask",
+    "fastcore",
+    "Jinja2",
+    "matplotlib",
+    "numba",
+    "numpy",
+    "pandas",
+    "pooch",
+    "scipy",
+    "tomli_w",
+    "toolz",
+    "tqdm",
+    "xarray >=0.15",
+    "xugrid >=0.3.0",
+]
+
+[project.urls]
+Homepage = "https://github.com/Deltares/imod-python"
+Documentation = "https://deltares.github.io/imod-python/"
+Repository = "https://github.com/Deltares/imod-python.git"
+"Bug Tracker" = "https://github.com/Deltares/imod-python/issues"
+Changelog = "https://github.com/Deltares/imod-python/blob/master/docs/api/changelog.rst"
+
+[project.optional-dependencies]
+all = [
+    "bottleneck",
+    "contextily >=1",
+    "cytoolz",
+    "geopandas",
+    "pyvista",
+    "rasterio >=1",
+    "rioxarray",
+    "shapely >=1.8",
+    "tomli >= 1.1.0 ; python_version < '3.11'",
+    "zarr",
+]
+dev = [
+    "imod[all]",
+    "black",
+    "ruff",
+    "flopy",
+    "hypothesis",
+    "mypy",
+    "pydata-sphinx-theme",
+    "pytest",
+    "pytest-cov",
+    "pytest-benchmark",
+    "sphinx",
+    "sphinx-gallery",
+]
+
 [tool.isort]
 profile = "black"
 
 [tool.coverage.report]
 exclude_lines = [
-  "pragma: no cover",
+    "pragma: no cover",
+]
+
+[tool.ruff.lint]
+select = ["C4", "E", "F", "I"]
+ignore = [
+    "C401",
+    "C402",
+    "C403",
+    "C404",
+    "C408",
+    "C416",
+    "C417",
+    "C419",
+    "D202",
+    "D205",
+    "D206",
+    "D400",
+    "D404",
+    "C405",
+    "E402",
+    "E501",
+    "E703",
+    "E713",
+    "E721",
+    "E731",
+    "E741",
+    "F811",
+    "PD002",
+    "PD901",
+    "PD003",
+    "PD004",
 ]
+fixable = ["I"]
+ignore-init-module-imports = true
+
+[tool.ruff.lint.pydocstyle]
+convention = "numpy"
+
+[tool.ruff.lint.per-file-ignores]
+"./docs/conf.py" = ["F401"]
+"__init__.py" = ["F401"]
+"conftest.py" = ["F401"]
+"test_examples.py" = ["F401"]
 
 [tool.mypy]
 files = "imod/mf6/**.py"