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Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 146 18

  2. fold_tree fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    Jupyter Notebook 71 8

  3. OMArk OMArk Public

    Python 68 7

  4. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 64 12

  5. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 28 10

  6. omamer omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    Python 16 5

Repositories

Showing 10 of 42 repositories
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA’s past year of commit activity
    Python 64 MPL-2.0 12 7 3 Updated Jan 29, 2025
  • pyoma Public

    Python library to interact with OMA hdf5 files

    DessimozLab/pyoma’s past year of commit activity
    Python 1 MPL-2.0 0 0 1 Updated Jan 27, 2025
  • OMArk Public
    DessimozLab/OMArk’s past year of commit activity
    Python 68 LGPL-3.0 7 9 3 Updated Jan 24, 2025
  • pylabeledrf Public

    A package to compute the Robinson Fould distance extended to labeled topologies.

    DessimozLab/pylabeledrf’s past year of commit activity
    Jupyter Notebook 5 MIT 0 0 1 Updated Jan 24, 2025
  • pyopa Public

    A fast implementation of optimal pairwise alignments with python

    DessimozLab/pyopa’s past year of commit activity
    C 7 MPL-2.0 2 2 6 Updated Jan 24, 2025
  • omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    DessimozLab/omamer’s past year of commit activity
    Python 16 LGPL-3.0 5 3 1 Updated Jan 24, 2025
  • fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    DessimozLab/fold_tree’s past year of commit activity
    Jupyter Notebook 71 MIT 8 4 0 Updated Jan 18, 2025
  • nf-oma-browser-build Public

    Nextflow pipeline to convert OMA to OMA browser

    DessimozLab/nf-oma-browser-build’s past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Jan 16, 2025
  • edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    DessimozLab/edgehog’s past year of commit activity
    Python 11 MIT 0 0 1 Updated Dec 17, 2024
  • omataxonomy Public

    taxonomy

    DessimozLab/omataxonomy’s past year of commit activity
    Python 0 GPL-3.0 0 0 1 Updated Dec 10, 2024
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