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DO July 2024 release
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allenbaron committed Jul 31, 2024
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3 changes: 2 additions & 1 deletion DOreports/DO-equivalentClass.tsv
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Expand Up @@ -222,6 +222,7 @@ DOID:1279 ocular motility disease 'cranial nerve disease' and ('disease has loca
DOID:1287 cardiovascular system disease disease and ('disease has location' some 'cardiovascular system')
DOID:12897 submandibular gland disease disease and ('disease has location' some 'submandibular gland')
DOID:12919 Plasmodium ovale malaria malaria and ('has material basis in' some 'Plasmodium ovale')
DOID:12969 central nervous system leukemia leukemia and ('disease has location' some 'central nervous system')
DOID:12978 Plasmodium vivax malaria malaria and ('has material basis in' some 'Plasmodium vivax')
DOID:13095 vertebral artery insufficiency syndrome and ('disease has location' some 'vertebral artery')
DOID:13145 benign renovascular hypertension 'benign secondary hypertension' and ('disease has location' some kidney)
Expand Down Expand Up @@ -623,7 +624,7 @@ DOID:732 urethral disease disease and ('disease has location' some urethra)
DOID:734 urethra cancer cancer and ('disease has location' some urethra)
DOID:7388 pulmonary vein leiomyosarcoma leiomyosarcoma and ('disease has location' some 'pulmonary vein')
DOID:7389 pulmonary artery leiomyosarcoma leiomyosarcoma and ('disease has location' some 'pulmonary artery')
DOID:74 hematopoietic system disease disease and ('disease has location' some 'hematopoietic system')|disease and ('has material basis in' some 'hematopoietic cell')
DOID:74 hematopoietic system disease disease and (('has material basis in' some 'hematopoietic cell') or ('disease has location' some 'hematopoietic system'))
DOID:7426 cutaneous anthrax 'anthrax disease' and ('disease has location' some 'zone of skin')
DOID:7437 uterus perivascular epithelioid cell tumor 'perivascular epithelioid cell tumor' and ('disease has location' some 'body of uterus')
DOID:746 adenomatoid tumor 'benign mesothelioma' and (has_origin some gland)
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16 changes: 12 additions & 4 deletions DOreports/DO-subClassOf-anonymous.tsv
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Expand Up @@ -441,7 +441,7 @@ DOID:0050967 spinocerebellar ataxia type 17 'has material basis in' some 'digeni
DOID:0050977 spinocerebellar ataxia type 28 'has symptom' some ptosis
DOID:0050995 episodic ataxia type 7 'has symptom' some 'muscle weakness'
DOID:0050996 episodic ataxia type 8 'has symptom' some 'muscle weakness'
DOID:0050997 cerebellar ataxia, mental retardation and dysequlibrium syndrome 'has material basis in' some 'autosomal recessive inheritance'
DOID:0050997 cerebellar ataxia, impaired intellectual development, and dysequilibrium syndrome 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060000 infective endocarditis 'has material basis in' some Bacteria|'has material basis in' some Fungi|'has symptom' some inflammation
DOID:0060001 withdrawal disorder 'has disease driver' some alcohol
DOID:0060010 Omenn syndrome 'has symptom' some diarrhea|'has symptom' some hepatosplenomegaly
Expand Down Expand Up @@ -880,6 +880,10 @@ DOID:0060974 autosomal recessive Robinow syndrome 2 'has material basis in' some
DOID:0060975 polycystic liver disease 2 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060976 polycystic liver disease 3 with or without kidney cysts 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060977 polycystic liver disease 4 with or without kidney cysts 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060978 Fanconi anemia complementation group W 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060979 Fanconi anemia complementation group S 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060981 mosaic variegated aneuploidy syndrome 4 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060983 sitosterolemia 2 'has material basis in' some 'autosomal recessive inheritance'
DOID:0070000 3-methylglutaconic aciduria type 8 'has material basis in' some 'autosomal recessive inheritance'
DOID:0070002 3-methylglutaconic aciduria type 9 'has material basis in' some 'autosomal recessive inheritance'
DOID:0070014 autosomal dominant dyskeratosis congenita 1 'has material basis in' some 'autosomal dominant inheritance'
Expand Down Expand Up @@ -1221,6 +1225,9 @@ DOID:0070551 epidermolytic palmoplantar keratoderma 2 'has material basis in' so
DOID:0070552 epidermolytic palmoplantar keratoderma 1 'has material basis in' some 'autosomal dominant inheritance'
DOID:0070554 palmoplantar keratoderma and woolly hair 'has material basis in' some 'autosomal recessive inheritance'
DOID:0070555 Nagashima-type palmoplantar keratosis 'has material basis in' some 'autosomal recessive inheritance'
DOID:0070560 glucose transporter type 1 deficiency syndrome 'has material basis in' some 'autosomal inheritance'
DOID:0070562 Fanconi-Bickel syndrome 'has material basis in' some 'autosomal recessive inheritance'
DOID:0070563 glucose-galactose malabsorption 'has material basis in' some 'autosomal recessive inheritance'
DOID:0080007 bone deterioration disease 'disease has location' some 'bone element'
DOID:0080010 bone structure disease 'has phenotype' some 'Abnormal bone structure'
DOID:0080020 Jansen's metaphyseal chondrodysplasia 'has material basis in' some 'autosomal dominant inheritance'|'has phenotype' some 'Disproportionate short-limb short stature'
Expand Down Expand Up @@ -1978,7 +1985,7 @@ DOID:0090013 severe combined immunodeficiency, autosomal recessive, T cell-negat
DOID:0090014 severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-positive, Nk cell-positive 'has material basis in' some 'autosomal recessive inheritance'
DOID:0090017 epidermolysis bullosa simplex with muscular dystrophy 'has material basis in' some 'autosomal recessive inheritance'
DOID:0090018 autosomal dominant familial periodic fever 'has material basis in' some 'autosomal dominant inheritance'
DOID:0090019 sitosterolemia 'has material basis in' some 'autosomal recessive inheritance'
DOID:0090019 sitosterolemia 1 'has material basis in' some 'autosomal recessive inheritance'
DOID:0090020 split hand-foot malformation 'disease has location' some (foot and hand)
DOID:0090021 split hand-foot malformation 1 'disease has location' some (foot and hand)|'has material basis in' some 'autosomal dominant inheritance'
DOID:0090022 split hand-foot malformation 5 'disease has location' some (foot and hand)
Expand All @@ -2003,7 +2010,7 @@ DOID:0090041 torsion dystonia 4 'has material basis in' some 'autosomal dominant
DOID:0090042 torsion dystonia 17 'has material basis in' some 'autosomal recessive inheritance'
DOID:0090043 dystonia 5 'has material basis in' some 'autosomal dominant inheritance'|'has material basis in' some 'autosomal recessive inheritance'
DOID:0090044 dystonia 9 'has disease driver' some alcohol|'has material basis in' some 'autosomal dominant inheritance'
DOID:0090045 childhood-onset GLUT1 deficiency syndrome 2 'existence starts during' some 'Childhood onset'|'has material basis in' some 'autosomal dominant inheritance'
DOID:0090045 glucose transporter type 1 deficiency syndrome 2 'existence starts during' some 'Childhood onset'|'has material basis in' some 'autosomal dominant inheritance'
DOID:0090046 dystonia 21 'has material basis in' some 'autosomal dominant inheritance'
DOID:0090047 paroxysmal nonkinesigenic dyskinesia 2 'has disease driver' some alcohol|'has material basis in' some 'autosomal dominant inheritance'
DOID:0090048 dystonia 16 'has material basis in' some 'autosomal recessive inheritance'
Expand Down Expand Up @@ -3764,6 +3771,7 @@ DOID:10439 Mooren's ulcer 'has symptom' some inflammation
DOID:10456 tonsillitis 'has phenotype' some 'Abnormality of the tonsils'|'has symptom' some 'pharynx inflammation'|'has symptom' some chills|'has symptom' some cough|'has symptom' some dysphagia|'has symptom' some fever|'has symptom' some headache|'has symptom' some inflammation
DOID:10457 Legionnaires' disease 'disease has feature' some pneumonia|'has symptom' some chills|'has symptom' some cough|'has symptom' some fever|'transmitted by' some 'droplet spread transmission'
DOID:10458 legionellosis 'has material basis in' some 'Legionella pneumophila'|'has symptom' some 'dry cough'|'has symptom' some diarrhea|'has symptom' some fever|'has symptom' some headache|'transmitted by' some 'droplet spread transmission'
DOID:10459 common cold 'has material basis in' some Viruses
DOID:10499 orbital granuloma 'has phenotype' some Granuloma
DOID:10519 chronic fungal otitis externa 'has material basis in' some Fungi
DOID:10525 double pterygium 'disease has feature' some astigmatism|'has symptom' some 'loss of vision'
Expand Down Expand Up @@ -4002,7 +4010,6 @@ DOID:12918 thromboangiitis obliterans 'has symptom' some gangrene
DOID:12919 Plasmodium ovale malaria 'has material basis in' some 'Plasmodium ovale'|'has symptom' some chills
DOID:12935 alcoholic cardiomyopathy 'has disease driver' some alcohol
DOID:1294 vulva carcinoma 'derives from' some 'epithelial cell'
DOID:12969 central nervous system leukemia 'disease has location' some 'central nervous system'|'has material basis in' some 'blood cell'
DOID:12978 Plasmodium vivax malaria 'has material basis in' some 'Plasmodium vivax'
DOID:12987 agranulocytosis 'has phenotype' some 'Abnormal granulocyte morphology'
DOID:13005 intra-abdominal lymph node mast cell malignancy 'derives from' some 'mast cell'
Expand Down Expand Up @@ -5260,6 +5267,7 @@ DOID:856 biotinidase deficiency 'has material basis in' some 'autosomal recessiv
DOID:8566 herpes simplex 'disease has location' some (foot and hand)|'disease has location' some (mouth or face or 'reproductive structure')|'has material basis in' some ('Human alphaherpesvirus 1' or 'Human alphaherpesvirus 2')|'transmitted by' some 'contact transmission'
DOID:8568 infectious mononucleosis 'has material basis in' some 'human gammaherpesvirus 4'|'has symptom' some 'enlargement of lymph nodes'|'has symptom' some fatigue|'has symptom' some fever|'has symptom' some lymphadenopathy|'has symptom' some splenomegaly
DOID:8577 ulcerative colitis 'has phenotype' some 'Abnormal immunoglobulin level'
DOID:8596 scarlet fever 'has material basis in' some 'Streptococcus pyogenes'
DOID:8607 herpetic whitlow 'disease has location' some (foot and hand)|'has symptom' some 'enlargement of lymph nodes'|'has symptom' some fever
DOID:8622 measles 'has material basis in' some 'Measles morbillivirus'|'has symptom' some conjunctivitis|'has symptom' some cough|'has symptom' some fever
DOID:8632 Kaposi's sarcoma 'has material basis in' some 'Human gammaherpesvirus 8'
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14 changes: 10 additions & 4 deletions DOreports/GARDinDO.tsv
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Expand Up @@ -204,7 +204,7 @@ id label xrefs
"DOID:0050975" "spinocerebellar ataxia type 26"@en "GARD:9995"
"DOID:0050976" "spinocerebellar ataxia type 27"@en "GARD:9603"
"DOID:0050979" "spinocerebellar ataxia type 30"@en "GARD:4950"
"DOID:0050997" "cerebellar ataxia, mental retardation and dysequlibrium syndrome"@en "GARD:1998"
"DOID:0050997" "cerebellar ataxia, impaired intellectual development, and dysequilibrium syndrome"@en "GARD:1998"
"DOID:0060000" "infective endocarditis"@en "GARD:6337"
"DOID:0060010" "Omenn syndrome"@en "GARD:8198"
"DOID:0060013" "X-linked severe combined immunodeficiency"@en "GARD:5618"
Expand Down Expand Up @@ -404,6 +404,7 @@ id label xrefs
"DOID:0060854" "autosomal recessive pseudohypoaldosteronism type 1"@en "GARD:4552"
"DOID:0060855" "autosomal dominant pseudohypoaldosteronism type 1"@en "GARD:9145"
"DOID:0060857" "septooptic dysplasia"@en "GARD:7627"
"DOID:0060862" "mal de Meleda"@en "GARD:92"
"DOID:0060868" "leukoencephalopathy with vanishing white matter"@en "GARD:231"
"DOID:0060869" "late-onset retinal degeneration"@en "GARD:4357"
"DOID:0060870" "isolated growth hormone deficiency"@en "GARD:12556"
Expand All @@ -421,8 +422,8 @@ id label xrefs
"DOID:0060948" "Ullrich congenital muscular dystrophy 2"@en "GARD:4769"
"DOID:0060949" "3-hydroxyisobutryl-CoA hydrolase deficiency"@en "GARD:13202"
"DOID:0060953" "ZTTK syndrome"@en "GARD:13489"
"DOID:0060958" "orofaciodigital syndrome XIV" "GARD:13655"
"DOID:0060959" "orofaciodigital syndrome II" "GARD:3701"
"DOID:0060958" "orofaciodigital syndrome XIV"@en "GARD:13655"
"DOID:0060959" "orofaciodigital syndrome II"@en "GARD:3701"
"DOID:0070026" "Revesz syndrome"@en "GARD:4695"
"DOID:0070029" "ITM2B-related cerebral amyloid angiopathy 1"@en "GARD:8344"
"DOID:0070055" "Xia-Gibbs Syndrome"@en "GARD:13409"
Expand Down Expand Up @@ -508,6 +509,9 @@ id label xrefs
"DOID:0070544" "congenital glutamine deficiency"@en "GARD:9848"
"DOID:0070550" "KRT1-related nonepidermolytic palmoplantar keratoderma"@en "GARD:5186"
"DOID:0070553" "focal palmoplantar and gingival keratosis"@en "GARD:3098"
"DOID:0070561" "glucose transporter type 1 deficiency syndrome 1"@en "GARD:9265"
"DOID:0070562" "Fanconi-Bickel syndrome"@en "GARD:2268"
"DOID:0070563" "glucose-galactose malabsorption"@en "GARD:6521"
"DOID:0080016" "spina bifida"@en "GARD:7673"
"DOID:0080021" "Schmid metaphyseal chondrodysplasia"@en "GARD:7029"
"DOID:0080028" "spondyloepimetaphyseal dysplasia, Strudwick type"@en "GARD:134"
Expand Down Expand Up @@ -737,10 +741,11 @@ id label xrefs
"DOID:0090015" "Cenani-Lenz syndactyly syndrome"@en "GARD:5084"
"DOID:0090016" "chromosome 5q deletion syndrome"@en "GARD:10840"
"DOID:0090018" "autosomal dominant familial periodic fever"@en "GARD:8457"
"DOID:0090019" "sitosterolemia"@en "GARD:7653"
"DOID:0090019" "sitosterolemia 1"@en "GARD:7653"
"DOID:0090020" "split hand-foot malformation"@en "GARD:6319"
"DOID:0090030" "corticosteroid-binding globulin deficiency"@en "GARD:13101"
"DOID:0090031" "D-bifunctional protein deficiency"@en "GARD:4539"
"DOID:0090045" "glucose transporter type 1 deficiency syndrome 2"@en "GARD:10541"
"DOID:0090048" "dystonia 16"@en "GARD:10539"
"DOID:0090053" "episodic kinesigenic dyskinesia 1"@en "GARD:8721"
"DOID:0090057" "X-linked dystonia-parkinsonism"@en "GARD:10533"
Expand Down Expand Up @@ -1509,6 +1514,7 @@ id label xrefs
"DOID:14291" "Noonan syndrome with multiple lentigines"@en "GARD:1100"
"DOID:14323" "Marfan syndrome"@en "GARD:6975"
"DOID:14330" "Parkinson's disease"@en "GARD:10251"
"DOID:1440" "Machado-Joseph disease"@en "GARD:6801"
"DOID:14400" "capillary leak syndrome"@en "GARD:1084"
"DOID:14415" "Legg-Calve-Perthes disease"@en "GARD:6874"
"DOID:14418" "dracunculiasis"@en "GARD:6286"
Expand Down
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