THIS REPOSITORY IS NOW CLOSED AND HAS BEEN MOVED HERE (https://github.com/large-scale-modelling/miracle)
This repository is for the Miracle simulation metadata outputs specification.
- README.md - this file
- analysis.dot - a graphviz rendering of the analysis sub-graph.
- bin - the directory containing all executables. These are all written in Python.
- cfg - a directory used by the example code containing
- doc - documentation directory
- DIARY.md - notes on what I have done (very out of date)
- example - the example code or the reference example
- finegrain.dot - a graphviz rendering of the example finegrain sub-graph
- folksonomy.dot - a graphviz rendering of the example folksonomy sub-graph
- lib - bash and python libraries used by code in
bin, and also the bash library is used by the code inexample. - LICENCSE - GPLv3 license
- man - a directory with a bunch of Unix man pages.
- project.dot - a graphviz rendering of the example project sub-graph
- provenance.dot - a graphviz rendering of the example provenance sub-graph
- save - the results of a previous run. This allows the re-running of
example/postprocessing without having to do the all the model runs again in
example. - services.dot - a graphviz rendering of the example services sub-graph
- workflow.dot - a graphviz rendering of the example workflow sub-graph
To run the job
example/clean.sh
. example/path.sh
nohup example/workflow.sh > workflow.out 2>workflow.err &
brew install postgresql
brew install libmagic
brew install coreutils
brew install sqlite3
add to .zshrc
PATH="/opt/homebrew/opt/coreutils/libexec/gnubin:$PATH"
After installing the databases then install the following using pip.
pip install --upgrade pip
pip uninstall psycopg2
pip install psycopg2-binary --no-cache-dir
pip install rfc3987
pip install python-magic-bin==0.4.14
pip install graphviz
psql to get to the database prompt.
psql some-database-name to get to a specific prompt
or at the prompt, type
\list
\connect some-database-name
\q or '\quit' to quit
\dt *table_name* to show a list of tables.
select * from *table_name* where false;
To get the table structure.