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Fixes for rc4

Fixes for rc4 #713

Workflow file for this run

name: CI/CD Build Workflow
on:
push:
branches: [main]
pull_request:
branches: [main]
workflow_dispatch:
jobs:
check-jobs-to-skip:
runs-on: ubuntu-latest
outputs:
should_skip: ${{ steps.skip_check.outputs.should_skip }}
steps:
- id: skip_check
uses: fkirc/skip-duplicate-actions@master
with:
cancel_others: true
paths_ignore: '["**/README.md", "**/docs/**"]'
pre-commit-hooks:
needs: check-jobs-to-skip
if: ${{ needs.check-jobs-to-skip.outputs.should_skip != 'true' }}
runs-on: ubuntu-latest
timeout-minutes: 2
steps:
- name: Checkout Code Repository
uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.9
# Run all pre-commit hooks on all the files.
# Getting only staged files can be tricky in case a new PR is opened
# since the action is run on a branch in detached head state
- name: Install and Run Pre-commit
uses: pre-commit/[email protected]
build:
needs: check-jobs-to-skip
if: ${{ needs.check-jobs-to-skip.outputs.should_skip != 'true' }}
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v3
- name: Cache Conda
uses: actions/cache@v3
env:
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
hashFiles('conda/dev.yml') }}
- name: Build Conda Environment
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: zppy_dev
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
mamba-version: "*"
environment-file: conda/dev.yml
channel-priority: strict
auto-update-conda: true
- if: ${{ needs.check-jobs-to-skip.outputs.should_skip != 'true' }}
name: Show Conda Environment Info
run: |
conda config --set anaconda_upload no
conda info
conda list
- name: Install `zppy` Package
run: pip install .
# Does not run the integration tests, which require server access
- name: Run Unit Tests
run: |
python -m unittest tests/test_*.py
publish-docs:
if: ${{ github.event_name == 'push' }}
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
timeout-minutes: 5
steps:
- uses: actions/checkout@v2
with:
persist-credentials: false
fetch-depth: 0
- name: Cache Conda
uses: actions/cache@v3
env:
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
hashFiles('conda/dev.yml') }}
- name: Build Conda Environment
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: zppy_dev
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
mamba-version: "*"
environment-file: conda/dev.yml
channel-priority: strict
auto-update-conda: true
- if: ${{ needs.check-jobs-to-skip.outputs.should_skip != 'true' }}
name: Show Conda Environment Info
run: |
conda config --set anaconda_upload no
conda info
conda list
- name: Install `zppy` Package
run: pip install .
- name: Build Sphinx Docs
run: |
cd docs
sphinx-multiversion source _build/html
- name: Copy Docs and Commit
run: |
# gh-pages branch must already exist
git clone https://github.com/E3SM-Project/zppy.git --branch gh-pages --single-branch gh-pages
# Only replace main docs with latest changes. Docs for tags should be untouched.
cd gh-pages
rm -r _build/html/main
cp -r ../docs/_build/html/main _build/html/main
git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com"
git config --local user.name "github-actions[bot]"
# The below command will fail if no changes were present, so we ignore it
git add .
git commit -m "Update documentation" -a || true
- name: Push Changes
uses: ad-m/github-push-action@master
with:
branch: gh-pages
directory: gh-pages
github_token: ${{ secrets.GITHUB_TOKEN }}
force: true