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Fix pkgdown (#19)
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TuomasBorman authored Mar 7, 2024
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# HoloFoodR <img src="inst/extdata/holofoodr_logo.png" align="right" width="120" />
# HoloFoodR <img src="man/figures/holofoodr_logo.png" align="right" width="120" />

An R package developed for streamlining the integration and analysis of EMBL-EBI
HoloFood data. This utility package simplifies access to the resource, enabling
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This research has received funding from the Horizon 2020 Programme of the
European Union within the FindingPheno project under grant agreement No 952914.

## FindingPheno <img src="inst/extdata/findingpheno_logo.png" align="right" width="160" />
## FindingPheno <img src="man/figures/findingpheno_logo.png" align="right" width="160" />

FindingPheno, an EU-funded project, is dedicated to developing computational
tools and methodologies for the integration and analysis of multi-omics data.
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- [FindingPheno website](https://findingpheno.eu/)

## HoloFood <img src="inst/extdata/holofood_logo.png" align="right" width="60" />
## HoloFood <img src="man/figures/holofood_logo.png" align="right" width="60" />

HoloFood, a project funded under EU's Horizon 2020 programme, employed a
holistic, "hologenomic", approach to enhance the efficiency of food production
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- [API browser](https://www.holofooddata.org/)
- [API documentation](https://docs.holofooddata.org/api.html)

## MGnify <img src="inst/extdata/mgnify_logo.jpg" align="right" width="60" />
## MGnify <img src="man/figures/mgnify_logo.jpg" align="right" width="60" />

EMBL-EBI's MGnify serves as a repository for microbiome data, offering a wide array
of analyses encompassing metabarcoding, metatranscriptomic, and metagenomic
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- [MGnify website](https://www.ebi.ac.uk/metagenomics)
- [MGnifyR](https://github.com/EBI-Metagenomics/MGnifyR)

## MetaboLights <img src="inst/extdata/metabolights_logo.jpg" align="right" width="160" />
## MetaboLights <img src="man/figures/metabolights_logo.jpg" align="right" width="160" />

MetaboLights, managed by EMBL-EBI, serves as a repository for metabolomic data.
It can be accessed through HoloFoodR package.

- [MetaboLights website](https://www.ebi.ac.uk/metabolights/)

## miaverse <img src="inst/extdata/mia_logo.png" align="right" width="60" />
## miaverse <img src="man/figures/mia_logo.png" align="right" width="60" />

miaverse is an R/Bioconductor framework specialized for microbiome downstream
data analysis, leveraging the TreeSummarizedExperiment class. It offers a
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