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add: install latest version of HoloFoodR
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artur-sannikov committed Oct 21, 2024
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -23,7 +23,7 @@ RUN R -e 'BiocManager::install(c("basilisk", "biomformat", \
"ComplexHeatmap", "MGnifyR", "mia", "miaViz", "MOFA2", "tidyverse"))'

# Install latest development version of HoloFoodR
RUN R -e 'remotes::install_github("EBI-Metagenomics/HoloFoodR@710613968475b1e0115c868cd44789debd9b5fbb")'
RUN R -e 'remotes::install_github("EBI-Metagenomics/HoloFoodR'

# Install mofapy2 for case study
RUN python3 -m pip install 'https://github.com/bioFAM/mofapy2/tarball/master'
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