update mom6_bathy and troubleshooting doc #62
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| # This workflow will install CESM, create visualCaseGen conda env, and run all CI tests. | |
| name: visualCaseGen CI | |
| on: | |
| push: | |
| branches: [ "main", "ci" ] | |
| pull_request: | |
| branches: [ "main", "ci" ] | |
| jobs: | |
| ci_tests: | |
| name: visualCaseGen CI tests | |
| runs-on: "ubuntu-latest" | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Install xmllint | |
| run: sudo apt-get install -y libxml2-utils | |
| # clone CESM | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: alperaltuntas/CESM | |
| ref: cesm3_0_beta03_gui | |
| #submodules: recursive | |
| # Run git-fleximod | |
| - name: checkout CESM | |
| env: | |
| GIT_CLONE_PROTECTION_ACTIVE: false | |
| run: | | |
| ./bin/git-fleximod update | |
| # Checkout the correct visualCaseGen branch | |
| - name: Checkout initial event (Pull Request) | |
| if: ${{ github.event_name == 'pull_request' }} | |
| run: | | |
| echo "Handling pull request" | |
| cd visualCaseGen/ | |
| git fetch origin pull/${{ github.event.pull_request.number }}/head:pr-${{ github.event.pull_request.number }} | |
| git checkout pr-${{ github.event.pull_request.number }} | |
| git submodule update --init | |
| - name: Checkout initial event (Push) | |
| if: ${{ github.event_name == 'push' }} | |
| run: | | |
| echo "Handling push" | |
| cd visualCaseGen/ | |
| git checkout ${{ github.sha }} | |
| git submodule update --init | |
| # set up conda | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| # visualCaseGen conda env | |
| - name: Create visualCaseGen conda env | |
| run: | | |
| cd visualCaseGen/ | |
| conda env create --file environment.yml | |
| conda activate visualCaseGen | |
| # Run all tests | |
| - name: Run tests | |
| env: | |
| CIME_MODEL: "cesm" | |
| CIME_DRIVER: "nuopc" | |
| CIME_TEST_PLATFORM: ubuntu-latest | |
| run: | | |
| export SRC_PATH="${GITHUB_WORKSPACE}" | |
| mkdir -p /home/runner/cesm/scratch | |
| cd visualCaseGen/ | |
| conda activate visualCaseGen | |
| pytest tests | |