Added new github action for pkgdown

.Rproj.user/shared/notebooks/paths

@@ -1,7 +1,9 @@
 /home/au687614/Documents/NetworkExtinction/.github/workflows/pkgdown.yaml="49E1A421"
+/home/au687614/Documents/NetworkExtinction/R/DataInit.R="38B9CACA"
 /home/au687614/Documents/NetworkExtinction/README.Rmd="A12DEE6D"
 /home/au687614/Documents/NetworkExtinction/tests/testthat.R="FD93C6CD"
 /home/au687614/Documents/NetworkExtinction/tests/testthat/test-CompareExtinctions.R="ECCC3341"
+/home/au687614/Documents/NetworkExtinction/tests/testthat/test-DataInit.R="5F72D670"
 /home/au687614/Documents/NetworkExtinction/tests/testthat/test-DegreeDistribution.R="B9B6621D"
 /home/au687614/Documents/NetworkExtinction/tests/testthat/test-ExtinctionOrder.R="37B1C277"
 /home/au687614/Documents/NetworkExtinction/tests/testthat/test-ExtinctionPlot.R="497ADBD2"

.github/workflows/pkgdown.yaml

@@ -1,57 +1,46 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches:
-      - main
-      - master
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
 
 name: pkgdown
 
 jobs:
   pkgdown:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
     env:
-      RSPM: https://packagemanager.rstudio.com/cran/__linux__/bionic/latest
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-
     steps:
-      - uses: actions/checkout@v2
-
-      - uses: r-lib/actions/setup-r@v2
-        id: install-r
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 
-      - name: Install pak and query dependencies
-        run: |
-          install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
-          saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds")
-        shell: Rscript {0}
-
-      - name: Cache R packages
-        uses: actions/cache@v2
+      - uses: r-lib/actions/setup-r@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ubuntu-20.04-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }}
-          restore-keys: ubuntu-20.04-${{ steps.install-r.outputs.installed-r-version }}-1-
+          use-public-rspm: true
 
-      - name: Install system dependencies
-        if: runner.os == 'Linux'
-        run: |
-          pak::local_system_requirements(execute = TRUE)
-          pak::pkg_system_requirements("pkgdown", execute = TRUE)
-        shell: Rscript {0}
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
 
-      - name: Install dependencies
-        run: |
-          pak::local_install_dev_deps(upgrade = TRUE)
-          pak::pkg_install("pkgdown")
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
         shell: Rscript {0}
 
-      - name: Install package
-        run: R CMD INSTALL .
-
-      - name: Build and deploy pkgdown site
-        run: |
-          git config --local user.name "$GITHUB_ACTOR"
-          git config --local user.email "[email protected]"
-          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs