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List (and corresponding code) of the mz values to be excluded since they are background noise
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,24 @@ | ||
"NEG" "POS" | ||
44.982 124.0868 | ||
91.003664 90.97639 | ||
112.96945 158.96384 | ||
180.9569 226.95129 | ||
248.94435 294.93874 | ||
316.9318 362.92619 | ||
384.91925 430.91364 | ||
452.9067 498.90109 | ||
520.89415 566.88854 | ||
588.8816 634.87599 | ||
656.86905 702.86344 | ||
724.8565 770.85089 | ||
792.84395 838.83834 | ||
860.8314 906.82579 | ||
928.81885 974.81324 | ||
996.8063 NA | ||
306.903 NA | ||
374.89045 NA | ||
623.3915 NA | ||
691.37895 NA | ||
759.3664 NA | ||
827.35385 NA | ||
895.3413 NA |
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Original file line number | Diff line number | Diff line change |
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NEG = c( | ||
# Formic Acid: | ||
44.9820, (46.00547*2)-1.007276, (44.9820 + seq(14)*67.98745), | ||
(44.9820+(c(3,4)*67.98745)+57.95865), | ||
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# ?? | ||
623.3915, (623.3915+seq(4)*67.98745) | ||
) | ||
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POS = c(124.0868, 90.97639, 90.97639+(seq(13)*67.98745)) | ||
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max.len = max(length(NEG), length(POS)) | ||
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NEG = c(NEG, rep(NA, max.len - length(NEG))) | ||
POS = c(POS, rep(NA, max.len - length(POS))) | ||
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exclusion_mz <- data.frame(NEG, POS) | ||
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write.table(exclusion_mz, "data/exclusion_mz.txt", sep="\t", row.names = FALSE) |