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Merge pull request #137 from FlyBase/release_2021-07-15
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Release 2021-07-15
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@Clare72
Clare72 authored Jul 15, 2021
2 parents cc35cbd + bc5fae8 commit 91ca862
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Showing 35 changed files with 8,661 additions and 1,926 deletions.
188 changes: 96 additions & 92 deletions components/dpo-simple.owl
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255 changes: 110 additions & 145 deletions fbcv-base.json
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118 changes: 53 additions & 65 deletions fbcv-base.obo
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219 changes: 105 additions & 114 deletions fbcv-base.owl
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959 changes: 826 additions & 133 deletions fbcv-full.json
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343 changes: 258 additions & 85 deletions fbcv-full.obo
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1,013 changes: 880 additions & 133 deletions fbcv-full.owl
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929 changes: 811 additions & 118 deletions fbcv-non-classified.json
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340 changes: 257 additions & 83 deletions fbcv-non-classified.obo
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1,009 changes: 878 additions & 131 deletions fbcv-non-classified.owl
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125 changes: 65 additions & 60 deletions fbcv-simple.json
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Original file line number Diff line number Diff line change
Expand Up @@ -838,11 +838,6 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/FBcv_0000790"
},
{
"obj": "http://purl.obolibrary.org/obo/FBcv_0000189",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/FBcv_0007000"
},
{
"obj": "http://purl.obolibrary.org/obo/FBcv_0000189",
"pred": "is_a",
Expand Down Expand Up @@ -5967,7 +5962,7 @@
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#date",
"val": "12:05:2021 09:12"
"val": "15:07:2021 17:02"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#default-namespace",
Expand All @@ -5979,11 +5974,11 @@
},
{
"pred": "http://www.w3.org/2002/07/owl#versionInfo",
"val": "2021-05-12"
"val": "2021-07-15"
}
],
"subsets": [],
"version": "http://purl.obolibrary.org/obo/fbcv/releases/2021-05-12/fbcv-simple.json",
"version": "http://purl.obolibrary.org/obo/fbcv/releases/2021-07-15/fbcv-simple.json",
"xrefs": []
},
"nodes": [
Expand Down Expand Up @@ -6144,8 +6139,12 @@
}
],
"definition": {
"val": "Phenotype of males that is a reduction in the proportion of fertilized eggs produced, but only to > 50% of wild-type.",
"xrefs": []
"val": "A phenotype that is a reduction in the ability of males to produce fertilized eggs as a result of mating, but only to > 50% of wild-type.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
}
},
"type": "CLASS"
Expand All @@ -6161,8 +6160,12 @@
}
],
"definition": {
"val": "Phenotype of females that is a reduction in the proportion of fertilized eggs produced, but only to > 50% of wild-type.",
"xrefs": []
"val": "A phenotype that is a reduction in the ability of females to produce fertilized eggs as a result of mating, but only to > 50% of wild-type.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
}
},
"type": "CLASS"
Expand Down Expand Up @@ -13574,8 +13577,10 @@
"The cause of sterility may be physical or behavioral. Note, this term should not be used with the qualifier 'partially'. Use semi-sterile or semi-fertile instead."
],
"definition": {
"val": "A phenotype that is the inability to produce a zygote.",
"val": "A phenotype that is the inability to produce fertilized eggs as a result of mating.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
},
Expand All @@ -13596,8 +13601,10 @@
}
],
"definition": {
"val": "A phenotype that is a reduction in the proportion of fertilized eggs produced to below 50% of wild-type.",
"val": "A phenotype that is a reduction in the ability to produce fertilized eggs as a result of mating to below 50% of wild-type.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
},
Expand All @@ -13621,8 +13628,10 @@
"The cause of sterility may be physical or behavioral. Note: this term should not be used with the qualifier 'partially' - use semi-sterile or semi-fertile instead."
],
"definition": {
"val": "A phenotype that is the inability of females to mate and produce fertilized offspring.",
"val": "A phenotype that is the inability of females to produce fertilized eggs as a result of mating.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
}
Expand All @@ -13640,8 +13649,10 @@
}
],
"definition": {
"val": "A phenotype that is a reduction in the proportion of fertilized eggs produced by females to below 50% of wild-type.",
"val": "A phenotype that is a reduction in the ability of females to produce fertilized eggs as a result of mating to below 50% of wild-type.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
}
Expand Down Expand Up @@ -13707,8 +13718,10 @@
"The cause of sterility may be physical or behavioral. Note - this term should not be used with the qualifier 'partially' - use semi-sterile or semi-fertile instead."
],
"definition": {
"val": "A phenotype that is the inability of males to mate and produce fertilized offspring.",
"val": "A phenotype that is the inability of males to produce fertilized eggs as a result of mating.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
}
Expand All @@ -13726,8 +13739,10 @@
}
],
"definition": {
"val": "A phenotype that is a reduction in the proportion of fertilized eggs produced by males to below 50% of wild-type.",
"val": "A phenotype that is a reduction in the ability of males to produce fertilized eggs as a result of mating to below 50% of wild-type.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
}
Expand Down Expand Up @@ -13793,8 +13808,10 @@
"Note, this term should not be used with the qualifier 'partially'. Use semi-sterile or semi-fertile instead."
],
"definition": {
"val": "A phenotype that is the ability to mate and as a result produce fertilized eggs.",
"val": "A phenotype that is the ability to produce fertilized eggs as a result of mating.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
},
Expand All @@ -13815,8 +13832,10 @@
}
],
"definition": {
"val": "Phenotype that is a reduction in the proportion of fertilized eggs produced, but only to > 50% of wild-type.",
"val": "A phenotype that is a reduction in the ability to produce fertilized eggs as a result of mating, but only to > 50% of wild-type.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
},
Expand All @@ -13840,8 +13859,10 @@
"Note - this term should not be used with the qualifier 'partially' - use male semi-sterile or male semi-fertile instead."
],
"definition": {
"val": "A phenotype that is the ability of males to mate and as a result produce fertilized eggs.",
"val": "A phenotype that is the ability of males to produce fertilized eggs as a result of mating.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
}
Expand All @@ -13862,8 +13883,10 @@
"Note - this term should not be used with the qualifier 'partially' - use female semi-sterile or female semi-fertile instead."
],
"definition": {
"val": "A phenotype that is the ability of females to mate and as a result produce fertilized eggs.",
"val": "A phenotype that is the ability of females to produce fertilized eggs as a result of mating.",
"xrefs": [
"FBC:AO",
"FBC:CP",
"FBC:DOS"
]
}
Expand Down Expand Up @@ -36077,6 +36100,10 @@
"lbl": "micropublication",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.obolibrary.org/obo/IAO_0100001",
"val": "FBcv:0000212"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#created_by",
"val": "http://orcid.org/0000-0002-1373-1705"
Expand All @@ -36090,13 +36117,17 @@
"val": "pub_type"
}
],
"comments": [
"Obsoleted, as 'paper' publication type will now be used for micropublications."
],
"definition": {
"val": "A short report describing a single stand-alone research finding that is peer-reviewed and published.",
"xrefs": [
"FBC:SM",
"http://www.micropublication.org"
]
}
},
"deprecated": true
},
"type": "CLASS"
},
Expand Down Expand Up @@ -38579,10 +38610,6 @@
"pred": "http://purl.obolibrary.org/obo/RO_0040042",
"val": "http://purl.obolibrary.org/obo/BFO_0000031"
},
{
"pred": "http://purl.obolibrary.org/obo/fbcv#isDefinedBy",
"val": "http://purl.obolibrary.org/obo/bfo.owl"
},
{
"pred": "http://purl.obolibrary.org/obo/fbcv#seeAlso",
"val": "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections"
Expand All @@ -38605,10 +38632,6 @@
{
"pred": "http://purl.obolibrary.org/obo/RO_0001900",
"val": "http://purl.obolibrary.org/obo/RO_0001901"
},
{
"pred": "http://purl.obolibrary.org/obo/fbcv#isDefinedBy",
"val": "http://purl.obolibrary.org/obo/bfo.owl"
}
],
"definition": {
Expand All @@ -38620,7 +38643,7 @@
}
},
{
"id": "http://purl.obolibrary.org/obo/BFO_0000062",
"id": "http://purl.obolibrary.org/obo/BFO_0000063",
"meta": {
"basicPropertyValues": [
{
Expand All @@ -38630,47 +38653,25 @@
],
"subsets": [
"http://purl.obolibrary.org/obo/fbcv#ro-eco"
],
"synonyms": [
{
"pred": "hasExactSynonym",
"val": "is preceded by",
"xrefs": [
"SIO:000249"
]
},
{
"pred": "hasExactSynonym",
"val": "takes place after",
"xrefs": [
"Allen:precedes"
]
}
]
}
},
{
"id": "http://purl.obolibrary.org/obo/BFO_0000063",
"id": "http://purl.obolibrary.org/obo/RO_0000052",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.obolibrary.org/obo/fbcv#isDefinedBy",
"val": "http://purl.obolibrary.org/obo/bfo.owl"
"pred": "http://purl.obolibrary.org/obo/RO_0001900",
"val": "http://purl.obolibrary.org/obo/RO_0001901"
}
],
"subsets": [
"http://purl.obolibrary.org/obo/fbcv#ro-eco"
]
}
},
{
"id": "http://purl.obolibrary.org/obo/RO_0000052",
"id": "http://purl.obolibrary.org/obo/RO_0002083",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.obolibrary.org/obo/RO_0001900",
"val": "http://purl.obolibrary.org/obo/RO_0001901"
}
"subsets": [
"http://purl.obolibrary.org/obo/fbcv#ro-eco"
]
}
},
Expand All @@ -38689,6 +38690,10 @@
{
"pred": "http://purl.obolibrary.org/obo/fbcv#seeAlso",
"val": "http://purl.obolibrary.org/obo/fbcv#defining-property-chains-involving-reflexivity"
},
{
"pred": "http://purl.obolibrary.org/obo/fbcv#seeAlso",
"val": "http://purl.obolibrary.org/obo/ro/docs/reflexivity/"
}
]
}
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