Merge pull request #249 from FlyBase/release_2024-10-17

Release 2024-10-17
FlyBase · Oct 17, 2024 · b64986c · b64986c
2 parents c310f60 + 9c7718b
commit b64986c
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diff --git a/.github/workflows/qc.yml b/.github/workflows/qc.yml
@@ -19,7 +19,7 @@ jobs:
   ontology_qc:
     # The type of runner that the job will run on
     runs-on: ubuntu-latest
-    container: obolibrary/odkfull:v1.5.1
+    container: obolibrary/odkfull:v1.5.2
 
     # Steps represent a sequence of tasks that will be executed as part of the job
     steps:

diff --git a/fbcv.obo b/fbcv.obo
@@ -1,6 +1,6 @@
 format-version: 1.2
-data-version: fbcv/releases/2024-08-08
-date: 08:08:2024 13:54
+data-version: fbcv/releases/2024-10-17
+date: 17:10:2024 15:25
 subsetdef: 1_STAR ""
 subsetdef: 2_STAR ""
 subsetdef: 3_STAR ""
@@ -54,7 +54,7 @@ property_value: dc:creator "https://orcid.org/0000-0002-0027-0858" xsd:string
 property_value: dc:description "A miscellaneous ontology of terms used for curation in FlyBase, including the DPO." xsd:string
 property_value: dc:title "FlyBase Controlled Vocabulary (FBcv)" xsd:string
 property_value: IAO:0000700 FBcv:0000000
-property_value: owl:versionInfo "2024-08-08" xsd:string
+property_value: owl:versionInfo "2024-10-17" xsd:string
 property_value: terms:license "https://creativecommons.org/licenses/by/4.0/" xsd:string
 
 [Term]
@@ -2553,8 +2553,8 @@ name: carbonyl group
 namespace: chebi_ontology
 subset: 3_STAR
 synonym: ">C=O" RELATED [IUPAC]
-synonym: "carbonyl group" EXACT [ChEBI]
 synonym: "carbonyl group" EXACT [UniProt]
+synonym: "carbonyl group" EXACT [ChEBI]
 is_a: CHEBI:51422 ! organodiyl group
 
 [Term]

diff --git a/flybase_controlled_vocabulary.obo b/flybase_controlled_vocabulary.obo
@@ -1,7 +1,6 @@
-
 format-version: 1.2
-data-version: 2024-08-08
-date: 08:08:2024 13:54
+data-version: 2024-10-17
+date: 17:10:2024 15:25
 subsetdef: camcur "camcur"
 subsetdef: common_tool_use "Terms to summarize typical use of a gene from one organism that is introduced into another organism primarily for use an experimental tool, rather than to study the function of the gene"
 subsetdef: do_not_annotate "Term not to be used for direct annotation"

diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -1,7 +1,7 @@
 # ----------------------------------------
 # Makefile for fbcv
 # Generated using ontology-development-kit
-# ODK Version: v1.5.1
+# ODK Version: v1.5.2
 # ----------------------------------------
 # IMPORTANT: DO NOT EDIT THIS FILE. To override default make goals, use fbcv.Makefile instead
 
@@ -46,7 +46,7 @@ REPORT_PROFILE_OPTS =
 OBO_FORMAT_OPTIONS =        
 SPARQL_VALIDATION_CHECKS =  owldef-self-reference iri-range label-with-iri multiple-replaced_by dc-properties 
 SPARQL_EXPORTS =            basic-report class-count-by-prefix edges xrefs obsoletes synonyms 
-ODK_VERSION_MAKEFILE =      v1.5.1
+ODK_VERSION_MAKEFILE =      v1.5.2
 
 TODAY ?=                    $(shell date +%Y-%m-%d)
 OBODATE ?=                  $(shell date +'%d:%m:%Y %H:%M')

diff --git a/src/ontology/components/dpo-simple.owl b/src/ontology/components/dpo-simple.owl
@@ -15,7 +15,7 @@
      xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/fbcv/components/dpo-simple.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbcv/releases/2024-08-08/components/dpo-simple.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbcv/releases/2024-10-17/components/dpo-simple.owl"/>
         <ns:attributionURL>http://dx.doi.org/10.1186/2041-1480-4-30</ns:attributionURL>
         <obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000347"/>
         <dc:creator>http://orcid.org/0000-0002-1373-1705</dc:creator>
@@ -25,9 +25,9 @@
         <dc:description>An ontology for the description of Drosophila melanogaster phenotypes.</dc:description>
         <dc:title>Drosophila Phenotype Ontology (DPO)</dc:title>
         <terms:license>https://creativecommons.org/licenses/by/4.0/</terms:license>
-        <oboInOwl:date>08:08:2024 12:59</oboInOwl:date>
+        <oboInOwl:date>17:10:2024 14:33</oboInOwl:date>
         <oboInOwl:default-namespace>FlyBase miscellaneous CV</oboInOwl:default-namespace>
-        <owl:versionInfo>2024-08-08</owl:versionInfo>
+        <owl:versionInfo>2024-10-17</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/fbcv/imports/merged_import.owl>
-<http://purl.obolibrary.org/obo/fbcv/releases/2024-08-08/imports/merged_import.owl>
-Annotation(owl:versionInfo "2024-08-08")
+<http://purl.obolibrary.org/obo/fbcv/releases/2024-10-17/imports/merged_import.owl>
+Annotation(owl:versionInfo "2024-10-17")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))

diff --git a/src/ontology/reports/chado_load_check_simple.txt b/src/ontology/reports/chado_load_check_simple.txt
@@ -1,3 +1,3 @@
 FBcv:0000680 ! abnormal proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924
-FBcv:0007533 ! increased rate of proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924
 FBcv:0007545 ! decreased rate of proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924
+FBcv:0007533 ! increased rate of proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924