CARMA fixes, and better Child timing

This release is zero-diff for the standard model configuration.
It is non-zero-diff, for example when running CARMA.

CARMA: fixed radiation callback; clarified sulfur inputs; fixed CARMA/GOCART2G sulfate production tendency term
GAAS: fixed a bug in determining the VM; fixed issue where the aod_? fields were not declared as MAPL_RestartSkip in the Registry file
ACHEM: added connectivity with GMI (4 fields)

Small improvement to lightning flash rates (MOIST and LOPEZ schemes).
Timing: Added an option for 'strict' child timing, to reduce bias against modules that call 'gather' routines
CI: Updated to use Baselibs default from the CircleCI orb

What's Changed

• Add connectivity from GMI to ACHEM (4 fields) by @mmanyin in #262
• Update CI to use Baselibs 7.13.0 by @mathomp4 in #264
• Fix ESMF_VMGet call in GAAS by @mathomp4 in #266
• Update CircleCI to use Orb Default Baselibs and BCs by @mathomp4 in #267
• Slightly improve lightning flash rates by @mmanyin in #270
• Features/pcolarco/carma gocart2g coupling by @pcolarco in #271
• Option for timing tests by @mmanyin in #272
• update log file prior to v1.14.0 by @mmanyin in #276
• Fixes to CARMA, etc by @mmanyin in #277

Full Changelog: v1.13.1...v1.14.0

v1.12.3 on 2023-10-03: Fix for GAAS import fields (v1.12)

Testing with GEOSadas and 3dvar found that the aod_? fields need to be declared as MAPL_RestartSkip. This PR fixes this on the 1.12 branch of GEOSchem_GridComp

This is zero-diff to v1.12.2

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Full Changelog: v1.12.2...v1.12.3

v1.12.0.1 on 2023-10-03: Fix for GAAS import fields (v1.12.0)

Testing with GEOSadas and 3dvar found that the aod_? fields need to be declared as MAPL_RestartSkip. This PR fixes this on the 1.12.0 branch of GEOSchem_GridComp

This is zero-diff to v1.12.0

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Full Changelog: v1.12.0...v1.12.0.1

v1.13.1 on 2023-04-24: Updates for GMI, GEOS-Chem; new SZA wrapper

This release is zero-diff for PCHEM experiments, relative to v1.13.0 .
It extends capability for GMI and GEOS-Chem.
It should be taken with GOCART v2.1.3 or later (QFED path update).

Details:

• Added connectivity from GOCART2G aerosols to GMI chem
• Added CO2 connectivity in GEOS_ChemGridComp for GOCART-GEOS-Chem coupling
• Added a wrapper routine for the MAPL Solar Zenith Angle call, in Chem_Shared
• Removed the routines (originally from GMI) which computed Solar Zenith Angle, in Chem_Shared; but in a later commit, this was added back temporarily, so that older versions of GMI and TR don't complain.
• Fixed a bug that had prevented GMI running with HEMCO

What's Changed

• Add CO2 connectivity between GOCART and GEOS-Chem by @christophkeller in #247
• Use solar zenith angle from MAPL by @mmanyin in #255
• temporarily restore the GmiSolar routines by @mmanyin in #256
• Use serial read for PChem species file by @mathomp4 in #257
• Feature/vvalenti/gocart2g to gmi connectivity by @vlvalenti in #254
• Updated CHANGELOG ahead of next release. by @mmanyin in #258
• Add support for GMI/GOCART2G coupling; new wrapper for MAPL SZA by @mmanyin in #259

Full Changelog: v1.13.0...v1.13.1

v1.12.2 on 2023-04-07: Complete serial read in PChem (v1.12)

This is a zero-diff patch to v1.12.1 where the parallel read of the PChem species file was completely removed leaving just the serial read-on-root-and-broadcast.

This was done due to issues encountered at NAS reading on many nodes.

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Full Changelog: v1.12.1...v1.12.2

v1.12.1 on 2023-04-06: Serial read in PChem (v1.12)

DEPRECATED. USE v1.12.2 if you need a v1.12 tag.

This is a zero-diff patch to v1.12.0 where the parallel read of the PChem species file was removed leaving just the serial read-on-root-and-broadcast.

This was done due to issues encountered at NAS reading on many nodes.

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Full Changelog: v1.12.0...v1.12.1

v1.13.0 on 2023-03-01: New QFED, and CARMA update

This release is non-zero-diff for AMIP simulations, due to QFED version differences (see below).
The QFED changes go along with the changes in GOCART v2.1.3
Details:
• Added connectivities in GEOS_ChemGridComp for CARMA-GMI coupling
• Added STS growth in CARMA microphysics
• For OPS configuration: removal of links, change of QFED paths from vNRT/ to v2.5r1-nrt/ (note after November 2021, files are v2.6r1) (0 diff)
• For AMIP configuration: update of QFED from v2.5r1 to v2.6r1 (most recent collection, may have small diff)

What's Changed

• Feature/vbuchard/update qfed emissions path by @vbuchard in #233
• prc: merging STS in CARMA and preparing way for CARMA-GMI coupling by @pcolarco in #246
• Update CHANGELOG in preparation for release v1.13.0 by @mmanyin in #248
• Updates to CARMA, and QFED paths by @mmanyin in #249

New Contributors

• @vbuchard made their first contribution in #233

Full Changelog: v1.12.0...v1.13.0

v1.12.0 on 2023-01-18: Split off GMI, StratChem and TR

As of this release, GEOSchem_GridComp no longer includes the code for GMI, StratChem and TR. Each of those modules resides in its own repository, and is included separately in the components.yaml at the top level of the application. For example, GEOSgcm PR 509 has appropriate revisions to the components file.
This release only includes structural changes, and it is zero-diff with the prior release (v1.11.0).

What's Changed

• Split out TR, GMI, and StratChem by @mathomp4 in #243
• Split off GMI, StratChem and TR (dev to main) by @mmanyin in #244

Full Changelog: v1.11.0...v1.12.0

v1.11.0 on 2023-01-05: Updates for GAAS, GMI, StratChem and TR

NB: This release requires MAPL v2.32 or higher

This release is numerically zero-diff for all simulations that ran under the previous release (v1.10.4), with the exception of the TR tracer stOX that uses a revised OX loss rate.

A few fixes:

• GAAS now runs w/ ExtData2G
• TR and GMI can now use the default files for LAI_FRAC and VEG_FRAC, regardless of the model's vertical resolution
• GMI and StratChem species now have the proper long_names (metadata)

More details:
Added GMI diagnostic stOX_loss for use by TR
GitHub label enforcement is now done via GitHub actions
CircleCI updated to Baselibs 7.7.0
In GMI: cleaned up lbssad_opt and h2oclim_opt
In GMI: cleaned up exports HNO3GASsad, HNO3CONDsad and jNO2val; the first two are now initialized to MAPL_UNDEF instead of 0.0; this does not change the results of the model, but these two diagnostic fields are more appropriate.

What's Changed

• new GMI export: stOX loss by @mmanyin in #230
• Move to use GitHub Action for Label Enforcement by @mathomp4 in #232
• Update CircleCI to Baselibs 7.7.0 by @mathomp4 in #234
• Fix GMI issue related to stOX_loss by @mmanyin in #235
• Cleaned up lbssad_opt and h2oclim_opt by @ssteenro in #236
• GMI upkeep by @mmanyin in #238
• Make GAAS work by @bena-nasa in #231
• fix LAI import, the 3rd dimension is not model levels, so need to use… by @bena-nasa in #239
• Fixed the long_names for StratChem chemical species by @mmanyin in #240
• GAAS now works with ExtData; maintenance and bug-fixes for TR, GMI and StratChem by @mmanyin in #241

Full Changelog: v1.10.4...v1.11.0

v1.10.4 on 2022-11-09: StratChem out of Chem_Registry.rc, GMI GCR bug fixed

Compared to v1.10.3:
This release is zero-diff for PCHEM and StratChem.
It is non-zero-diff for GMI.

Fixed bug in GMI galactic cosmic rays ( @vlvalenti )
StratChem entries have been removed from Chem_Registry.rc, and relocated to SC_Mech_Registry.rc .
Outdated GMI resource files related to CCMI REF-C1 and REF-C2 have been removed.

What's Changed

• Moved StratChem out of Chem_Registry.rc by @mmanyin in #225
• Remove old CCMI resources from GMI by @mmanyin in #226
• Feature/vvalenti/gcr emissions fix by @vlvalenti in #227
• Edit CHANGELOG, preparing for release by @mmanyin in #228
• Fix for GMI GCRs; refactored StratChem resource files by @mmanyin in #229

Full Changelog: v1.10.3...v1.10.4