GitHub - Gautam8387/scarf at refs/heads/zarrMerge-datafix

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Latest commit Gautam8387 added pyarrow in requirements Dec 17, 2024 c2d0432 · Dec 17, 2024 History 1,024 Commits
.github	.github	fixes for deployment	Jul 26, 2024
bin	bin	removed sgtsne shared libs. Need better solution	May 24, 2021
docs	docs	rtd related changes	Jul 26, 2024
scarf	scarf	Added explanation and comments	Dec 17, 2024
.gitattribute	.gitattribute	first commit	May 7, 2020
.gitignore	.gitignore	Added Support for Reading Unfiltered Cell Ranger Feature Barcode Matr…	Sep 30, 2024
.readthedocs.yml	.readthedocs.yml	switched to py311	Jul 26, 2024
Dockerfile	Dockerfile	fixes for deployment	Jul 26, 2024
LICENSE	LICENSE	docs fixes	Apr 29, 2021
MANIFEST.in	MANIFEST.in	fixes for deployment	Jul 26, 2024
README.rst	README.rst	Update README.rst	Jul 26, 2024
VERSION	VERSION	Version bump	Oct 23, 2024
pypi_README.rst	pypi_README.rst	moved pypi readme	Sep 17, 2022
pyproject.toml	pyproject.toml	added tests for loomreader, mtxreader and loomtozarr	Jul 18, 2021
requirements.txt	requirements.txt	added pyarrow in requirements	Dec 17, 2024
requirements_extra.txt	requirements_extra.txt	dependency update	Jul 26, 2024
setup.py	setup.py	formatting and import optimizations	Aug 1, 2024

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A framework for memory-efficient analysis of single-cell genomics data

🔌 Installation | 📖 Documentation | 🚀 Getting started | 📝 Article in Nature Comm

Install with all the dependencies: pip install scarf[extra]

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Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

scarf.readthedocs.io

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BSD-3-Clause license

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