Render all notebooks (#119)

* render all notebooks * let qaqc pass even with link errors * execute dataint2 * update citation.cff from team.yml * cell tags for hiding output * bump cache key * bump to ATL11 v5 * skip execution of cloud access cells
ICESAT-2HackWeek · Apr 15, 2022 · 9da28ab · 9da28ab
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diff --git a/.github/actions/buildresources/action.yaml b/.github/actions/buildresources/action.yaml
@@ -25,7 +25,7 @@ runs:
       with:
         path: ./book/_build
         # NOTE: change key to "jupyterbook-N-DATE"
-        key: jupyterbook-2022-03-23
+        key: jupyterbook-2022-04-14
 
     - uses: ./.github/actions/setupconda
 

diff --git a/.github/workflows/qaqc.yaml b/.github/workflows/qaqc.yaml
@@ -51,5 +51,6 @@ jobs:
 
     - name: Check External Links
       if: always()
+      continue-on-error: true
       run: |
         jb build book --builder linkcheck
diff --git a/CITATION.cff b/CITATION.cff
@@ -1,28 +1,90 @@
 cff-version: 1.2.0
-message: "If you use this book, please cite it as below."
-title: "[Event Name] Hackweek JupyterBook Tutorials"
-version: 2021.??.??
-date-released: "2021-??-??"
+message: If you use this book, please cite it as below.
+title: ICESat-2 Hackweek Website
+version: 2022.04.15
+date-released: 2022-04-15
 identifiers:
-- description: "collection of archived snapshots of all versions"
+- description: collection of archived snapshots of all versions
   type: doi
   value: TODO
   license: MIT
-  repository-code: TODO
+  repository-code: https://github.com/ICESAT-2HackWeek/website2022
 authors:
-- family-names: Henderson
-  given-names: Scott
-  orcid: "https://orcid.org/0000-0003-0624-4965"
-  affiliation: University of Washington
-- family-names: Arendt
-  given-names: Anthony
-  orcid: "https://orcid.org/0000-0003-0429-6905"
-  affiliation: University of Washington
 - family-names: Scheick
   given-names: Jessica
   affiliation: University of New Hampshire
-  orcid: "https://orcid.org/0000-0002-3421-4459"
-
+- family-names: Arendt
+  given-names: Anthony
+  affiliation: eScience Institute
+- family-names: Haley
+  given-names: Charley
+  affiliation: Collaboration Architect at eScience Institute
+- family-names: Henderson
+  given-names: Scott
+  affiliation: eScience Institute
+- family-names: Koh
+  given-names: Jane
+  affiliation: eScience Institute
+- family-names: Setiawan
+  given-names: Don
+  affiliation: School of Oceanography
+- family-names: Alterman
+  given-names: Naomi
+  affiliation: eScience Institute
+- family-names: Meyer
+  given-names: Joachim
+  affiliation: University of Utah
+- family-names: Cristea
+  given-names: Nicoleta
+  affiliation: eScience Institute
+- family-names: Schweiger
+  given-names: Axel
+  affiliation: Polar Science Center/APL/UW
+- family-names: Barciauskas
+  given-names: Aimee
+  affiliation: Development Seed
+- family-names: Smith
+  given-names: Ben
+  affiliation: University of Washington APL
+- family-names: Piunno
+  given-names: Romina
+  affiliation: University of Toronto
+- family-names: Shapero
+  given-names: Daniel
+  affiliation: UW Applied Physics Laboratory
+- family-names: Fair
+  given-names: Zachary
+  affiliation: NASA GSFC
+- family-names: Arndt
+  given-names: Philipp
+  affiliation: Scripps Polar Center, UC San Diego
+- family-names: Leong
+  given-names: Wei Ji
+  affiliation: Byrd Polar and Climate Research Center
+- family-names: Sutterley
+  given-names: Tyler
+  affiliation: UW Applied Physics Laboratory
+- family-names: Snow
+  given-names: Tasha
+  affiliation: Colorado School of Mines
+- family-names: Beig
+  given-names: Mikala
+  affiliation: National Snow and Ice Data Center NASA DAAC
+- family-names: Besso
+  given-names: Hannah
+  affiliation: University of Washington
+- family-names: Liu
+  given-names: Zheng
+  affiliation: Polar Science Center/APL/UW
+- family-names: Joughin
+  given-names: Ian
+  affiliation: Polar Science Center/APL/UW
+- family-names: Bisson
+  given-names: Kelsey
+  affiliation: Oregon State University
+- family-names: Sauthoff
+  given-names: Wilson
+  affiliation: Colorado School of Mines
 keywords:
 - NASA
 - Hackweek

diff --git a/book/_config.yml b/book/_config.yml
@@ -37,8 +37,6 @@ execute:
   execute_notebooks: 'cache'
   exclude_patterns:
     - "**/dataintegration-1.ipynb"
-    - "**/dataintegration-2.ipynb"
-    - "**/geospatial-advanced.ipynb"
     - "**/Visualization_Earth_Engine_geemap_IS2_HW_2022.ipynb"
     - "**/Visualization_geemap_use_examples.ipynb"
 

diff --git a/book/tutorials/DataIntegration/dataintegration-1.ipynb b/book/tutorials/DataIntegration/dataintegration-1.ipynb
diff --git a/book/tutorials/DataIntegration/dataintegration-2.ipynb b/book/tutorials/DataIntegration/dataintegration-2.ipynb
@@ -179,7 +179,9 @@
    "execution_count": null,
    "id": "d7c8cfa3-dcdb-4cb0-b093-0dacfb25a0af",
    "metadata": {
-    "tags": []
+    "tags": [
+     "hide-output"
+    ]
    },
    "outputs": [],
    "source": [
@@ -600,7 +602,11 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "06088dda",
-   "metadata": {},
+   "metadata": {
+    "tags": [
+     "hide-output"
+    ]
+   },
    "outputs": [],
    "source": [
     "myUrls.getURLS()"
@@ -653,7 +659,11 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "14078020",
-   "metadata": {},
+   "metadata": {
+    "tags": [
+     "hide-output"
+    ]
+   },
    "outputs": [],
    "source": [
     "urlNames = [x.replace('vv','*').replace('.tif','') for x in myUrls.getCogs()] # getCogs filters to ensure tif products\n",
@@ -717,7 +727,11 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "be0c3927",
-   "metadata": {},
+   "metadata": {
+    "tags": [
+     "remove-output"
+    ]
+   },
    "outputs": [],
    "source": [
     "myVelSeries.loadRemote() # Load the data to memory"
@@ -755,12 +769,25 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "92ea55dc",
-   "metadata": {},
+   "metadata": {
+    "tags": [
+     "remove-output"
+    ]
+   },
    "outputs": [],
    "source": [
     "myOverview = nisar.nisarVelSeries() # Create Series\n",
     "myOverview.readSeriesFromTiff([urlNames[-1]], url=True, readSpeed=False, overviewLevel=3)  # readSpeed=False computes speed from vx, vy rather than downloading\n",
-    "myOverview.loadRemote()\n",
+    "myOverview.loadRemote()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "747fcf69-e4f7-487f-9ed7-323614848268",
+   "metadata": {},
+   "outputs": [],
+   "source": [
     "myOverview.xr  # Add semicolon after to suppress output"
    ]
   },
@@ -1395,7 +1422,11 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "24552df8-9bba-4754-9e16-7aa70ee99aa8",
-   "metadata": {},
+   "metadata": {
+    "tags": [
+     "hide-output"
+    ]
+   },
    "outputs": [],
    "source": [
     "# Set Earthdata credentials\n",
@@ -1411,7 +1442,11 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "00221419-857c-43a9-a1f6-589691d250ed",
-   "metadata": {},
+   "metadata": {
+    "tags": [
+     "hide-output"
+    ]
+   },
    "outputs": [],
    "source": [
     "path = '/tmp/DataIntegration/'\n",
@@ -1430,7 +1465,7 @@
     "fig, ax = plt.subplots(1, 1)\n",
     "\n",
     "# Iterate through the files to grab elevation, and derive elevation differences relative to April 2019\n",
-    "files = ['processed_' + granule for granule in region.avail_granules(ids=True)[0]]\n",
+    "files = ['/tmp/DataIntegration/processed_' + granule for granule in region.avail_granules(ids=True)[0]]\n",
     "\n",
     "# Get the initial data from April 2019\n",
     "with h5py.File(files[0]) as f:\n",