Merge pull request #953 from INCATools/create-pull-request/patch

Update constraints.txt

constraints.txt

@@ -2,7 +2,7 @@ airium==0.2.6
 alabaster==0.7.13
 annotated-types==0.6.0
 antlr4-python3-runtime==4.9.3
-anyio==4.0.0
+anyio==4.1.0
 appdirs==1.4.4
 argon2-cffi==23.1.0
 argon2-cffi-bindings==21.2.0
@@ -17,8 +17,8 @@ bidict==0.22.1
 bleach==6.1.0
 bmt==1.1.2
 cachetools==5.3.2
-cattrs==23.1.2
-certifi==2023.7.22
+cattrs==23.2.2
+certifi==2023.11.17
 cffi==1.16.0
 CFGraph==0.2.1
 chardet==5.2.0
@@ -50,18 +50,18 @@ dosdp==0.1.10.dev1
 EditorConfig==0.12.3
 et-xmlfile==1.1.0
 eutils==0.6.0
-exceptiongroup==1.1.3
+exceptiongroup==1.2.0
 executing==2.0.1
-fastjsonschema==2.18.1
+fastjsonschema==2.19.0
 fastobo==0.12.2
 filelock==3.13.1
-fonttools==4.44.0
+fonttools==4.45.1
 fqdn==1.5.1
 funowl==0.2.3
 ghp-import==2.1.0
 google==3.0.0
 google-api-core==2.14.0
-google-api-python-client==2.107.0
+google-api-python-client==2.108.0
 google-auth==2.23.4
 google-auth-httplib2==0.1.1
 google-auth-oauthlib==1.1.0
@@ -72,14 +72,14 @@ gspread==5.12.0
 gspread-formatting==1.1.2
 hbreader==0.9.1
 httplib2==0.22.0
-idna==3.4
+idna==3.6
 ijson==3.2.3
 imagesize==1.4.1
 importlib-metadata==6.8.0
 inflection==0.5.1
 iniconfig==2.0.0
 ipykernel==6.26.0
-ipython==8.17.2
+ipython==8.18.1
 ipywidgets==8.1.1
 isodate==0.6.1
 isoduration==20.11.0
@@ -100,68 +100,68 @@ jsonpath-ng==1.6.0
 jsonpath-rw==1.4.0
 jsonpickle==3.0.2
 jsonpointer==2.4
-jsonschema==4.19.2
-jsonschema-specifications==2023.7.1
+jsonschema==4.20.0
+jsonschema-specifications==2023.11.1
 jsonschema2md==1.0.0
 jsonstreams==0.6.0
 jupyter==1.0.0
 jupyter-console==6.6.3
 jupyter-events==0.9.0
-jupyter-lsp==2.2.0
+jupyter-lsp==2.2.1
 jupyter_client==8.6.0
 jupyter_core==5.5.0
-jupyter_server==2.10.0
+jupyter_server==2.10.1
 jupyter_server_terminals==0.4.4
-jupyterlab==4.0.8
-jupyterlab-pygments==0.2.2
+jupyterlab==4.0.9
 jupyterlab-widgets==3.0.9
-jupyterlab_server==2.25.1
+jupyterlab_pygments==0.3.0
+jupyterlab_server==2.25.2
 keyring==24.3.0
 kgcl-rdflib==0.5.0
 kgcl-schema==0.6.0
 kgx==2.2.5
 kiwisolver==1.4.5
 lark==1.1.8
 lightrdf==0.4.0
-linkml==1.6.2
+linkml==1.6.3
 linkml-dataops==0.1.0
 linkml-renderer==0.3.0
-linkml-runtime==1.6.1
+linkml-runtime==1.6.2
 lxml==4.9.3
 Markdown==3.5.1
 markdown-it-py==3.0.0
 MarkupSafe==2.1.3
 marshmallow==3.20.1
-matplotlib==3.8.1
+matplotlib==3.8.2
 matplotlib-inline==0.1.6
 matplotlib-venn==0.11.9
 mdurl==0.1.2
 mergedeep==1.3.4
 mistune==3.0.2
 mkdocs==1.5.3
-mkdocs-material==9.4.8
-mkdocs-material-extensions==1.3
+mkdocs-material==9.4.14
+mkdocs-material-extensions==1.3.1
 mkdocs-mermaid2-plugin==0.6.0
 mkdocs-table-reader-plugin==2.0.3
 more-click==0.1.2
 more-itertools==10.1.0
-mypy==1.7.0
+mypy==1.7.1
 mypy-extensions==1.0.0
 nbclient==0.9.0
 nbconvert==7.11.0
 nbformat==5.9.2
-ndex2==3.5.1
+ndex2==3.6.0
 neo4j==4.4.11
 nest-asyncio==1.5.8
 networkx==3.2.1
 nh3==0.2.14
 notebook==7.0.6
 notebook_shim==0.2.3
 numpy==1.26.2
-oaklib==0.5.21
+oaklib==0.5.22
 oauthlib==3.2.2
 ols-client==0.1.4
-ontobio==2.8.17
+ontobio==2.8.19
 ontodev-cogs==0.3.3
 ontodev-gizmos==0.3.2
 ontoportal-client==0.0.4
@@ -173,38 +173,38 @@ paginate==0.5.6
 pandas==2.1.3
 pandocfilters==1.5.0
 pansql==0.0.1
-parse==1.19.1
+parse==1.20.0
 parso==0.8.3
 pathspec==0.11.2
-pexpect==4.8.0
+pexpect==4.9.0
 Pillow==10.1.0
 pkginfo==1.9.6
-platformdirs==3.11.0
+platformdirs==4.0.0
 plotly==5.18.0
 pluggy==1.3.0
 ply==3.11
 prefixcommons==0.1.12
 prefixmaps==0.1.5
 prologterms==0.0.6
-prometheus-client==0.18.0
-prompt-toolkit==3.0.40
+prometheus-client==0.19.0
+prompt-toolkit==3.0.41
 pronto==2.5.5
-protobuf==4.25.0
+protobuf==4.25.1
 psutil==5.9.6
 ptyprocess==0.7.0
 pure-eval==0.2.2
 py==1.11.0
-pyasn1==0.5.0
+pyasn1==0.5.1
 pyasn1-modules==0.3.0
 pycparser==2.21
-pydantic==2.4.2
-pydantic_core==2.10.1
+pydantic==2.5.2
+pydantic_core==2.14.5
 pydotplus==2.0.2
 PyGithub==2.1.1
-Pygments==2.16.1
+Pygments==2.17.2
 PyJSG==0.11.10
 PyJWT==2.8.0
-pymdown-extensions==10.4
+pymdown-extensions==10.5
 PyNaCl==1.5.0
 pyparsing==2.4.7
 PyShEx==0.8.1
@@ -221,30 +221,30 @@ pytz==2023.3.post1
 PyYAML==6.0.1
 pyyaml_env_tag==0.1
 pyzmq==25.1.1
-qtconsole==5.5.0
+qtconsole==5.5.1
 QtPy==2.4.1
 ratelimit==2.2.1
 rdflib==7.0.0
 rdflib-jsonld==0.6.1
 rdflib-shim==1.0.3
 readme-renderer==42.0
 recommonmark==0.7.1
-referencing==0.30.2
+referencing==0.31.0
 regex==2023.10.3
 requests==2.31.0
-requests-cache==1.1.0
+requests-cache==1.1.1
 requests-oauthlib==1.3.1
 requests-toolbelt==1.0.0
 rfc3339-validator==0.1.4
 rfc3986==2.0.0
 rfc3986-validator==0.1.1
 rfc3987==1.3.8
-rich==13.6.0
-rpds-py==0.12.0
+rich==13.7.0
+rpds-py==0.13.1
 rsa==4.9
 ruamel.yaml==0.18.5
 ruamel.yaml.clib==0.2.8
-scipy==1.11.3
+scipy==1.11.4
 seaborn==0.13.0
 SecretStorage==3.3.3
 semsimian==0.2.1
@@ -294,9 +294,9 @@ uritemplate==4.1.1
 url-normalize==1.4.3
 urllib3==2.1.0
 validators==0.20.0
-virtualenv==20.24.6
+virtualenv==20.24.7
 watchdog==3.0.0
-wcwidth==0.2.9
+wcwidth==0.2.12
 webcolors==1.13
 webencodings==0.5.1
 websocket-client==1.6.4