Skip to content

Releases: INCATools/pandasaurus_cxg

0.2.1

14 Oct 15:38
@ubyndr ubyndr
0.2.1
83f9d25
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
0.2.1 Latest
Latest 
Add missing OWL Class type to annotated targets (#90)

* Add missing OWL class type to annotated targets

* Update version to 0.2.1
Assets 2
Loading

0.2.0

04 Oct 11:50
@ubyndr ubyndr
0.2.0
97f4d5b
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
0.2.0

What's Changed

  • version 0.0.1-alpha by @ubyndr in #4
  • Add method to query cl slims by @ubyndr in #8
  • Support co annotation analysis by @ubyndr in #9
  • Jupyter notebook snippets needed by @ubyndr in #15
  • Support option of choosing only normal cells for analysis by @ubyndr in #16
  • Co annotation analysis - enrichment extension [Merge after #16] by @ubyndr in #22
  • Update walkthrough.ipynb by @dosumis in #28
  • Add function to filter anndata matrix by cell type by @ubyndr in #25
  • Generate graphs using cell sets as unifying concept by @ubyndr in #24
  • Support basic metaschema for flagging cell type fields by @ubyndr in #33
  • Update README.md by @dosumis in #40
  • Add wrapper object that initialises and contains enricher and analyzer objects by @ubyndr in #34
  • Updated toml and lock files by @ubyndr in #42
  • Create ROADMAP.md by @dosumis in #43
  • Pygraphviz fix by @ubyndr in #44
  • Added 'Detailed installation guide for pygraphviz issue' section by @ubyndr in #48
  • Provide term names for contextual enrichment terms by @ubyndr in #45
  • Extend graph visualization to give more flexibility in filtering by @ubyndr in #47
  • Documentation automation with Sphinx by @ubyndr in #49
  • Minor bug fixes and improvements manual testing notes by @ubyndr in #51
  • Test case implementation by @ubyndr in #52
  • Documentation fix by @ubyndr in #53
  • Documentation fix by @ubyndr in #54
  • Changes for MVP-4632 by @ubyndr in #56
  • Version update 0.1.7 by @ubyndr in #58
  • Transitive reduction patch by @ubyndr in #60
  • Updated version to 0.1.9 by @ubyndr in #61
  • Refactored enrichment method check by @ubyndr in #62
  • Added remove_special_characters method by @ubyndr in #63
  • Cl annotation patch by @ubyndr in #66
  • Updated create_cell_type_dict docstring by @ubyndr in #68
  • Fix for amazing rendering at create_cell_type_dict docstring by @ubyndr in #69
  • Dataset object populated with properties from h5ad uns by @ubyndr in #70
  • Drop empty values in seed_dict by @anitacaron in #71
  • Unknown key-value pair handling has been added by @ubyndr in #72
  • Add method to track cell contribution percentages by cxg obs fields by @ubyndr in #73
  • Doi patch for citation field in uns by @ubyndr in #74
  • Remove special characters patch by @ubyndr in #75
  • Refactored CURIE generation logic for annotated_target by @ubyndr in #76
  • Refactored seed_dict assignment logic by @ubyndr in #77
  • Metadata percentage nodes patch for NaN values by @ubyndr in #78
  • Define EFO prefix to be used in development_stage field by @anitacaron in #80
  • Dataset IRIs are based on CxG dataset UUID by @ubyndr in #82
  • Replace anndataread with anndataread h5ad due to 2024 deprecation by @ubyndr in #84
  • Add GitHub Action for Automatic PyPI Publishing by @ubyndr in #86
  • Refactor to support separate cell cluster nodes by @ubyndr in #88

New Contributors

Full Changelog: https://github.com/INCATools/pandasaurus_cxg/commits/0.2.0

Contributors

dosumis, anitacaron, and ubyndr
Assets 2
Loading