Allow StimulusExperiment to use any type of intracellular electrode #100
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,73 @@ | ||
| { | ||
| "@context": [ | ||
| "{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0", | ||
| { | ||
| "this": "{{base}}/schemas/neurosciencegraph/electrophysiology/stimulusexperiment/v0.1.1/shapes/" | ||
| } | ||
| ], | ||
| "@type": "nxv:Schema", | ||
| "imports": [ | ||
| "{{base}}/schemas/neurosciencegraph/commons/activity/v0.1.3", | ||
| "{{base}}/schemas/neurosciencegraph/commons/typedlabeledontologyterm/v0.1.1" | ||
| ], | ||
| "shapes": [ | ||
| { | ||
| "@id": "this:StimulusExperimentShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "Stimulus experiment shape definition", | ||
| "targetClass": "nsg:StimulusExperiment", | ||
| "nodeKind": "sh:BlankNodeOrIRI", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/activity/v0.1.3/shapes/ActivityShape" | ||
| }, | ||
| { | ||
| "property": [ | ||
| { | ||
| "path": "nsg:stimulus", | ||
| "name": "Stimulus", | ||
| "description": "The shape of the stimulus", | ||
| "node": "this:StimulusShape", | ||
| "minCount": 1, | ||
| "maxCount": 1 | ||
| }, | ||
| { | ||
| "path": "prov:used", | ||
| "description": "The cell recorded from", | ||
| "class": { | ||
|
There was a problem hiding this comment. I suggest to use nsg:Cell as a type of the used entity. There was a problem hiding this comment. I'm not sure that is specific enough. It is important that the object used in the experiment be a cell-that-has-been-recorded-from. I had in mind to define "nsg:RecordedCell" as a parent of "nsg:PatchedCell" and "nsg:IntraCellularSharpElectrodeRecordedCell", but I didn't do that yet because I wanted to keep the changes minimal so as to get them deployed as soon as possible. There was a problem hiding this comment. Thank you for the clarification. I'm all for using nsg:RecordedCell then. I think it makes sense. |
||
| "or": ["nsg:PatchedCell", "nsg:IntraCellularSharpElectrodeRecordedCell"] | ||
| }, | ||
| "minCount": 1, | ||
| "maxCount": 1 | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:StimulusShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "Stimulus shape definition", | ||
| "property": [ | ||
| { | ||
| "path": "nsg:stimulusType", | ||
| "name": "Stimulus type", | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/typedlabeledontologyterm/v0.1.1/shapes/StimulusTypeOntologyTermShape", | ||
| "minCount": 1, | ||
| "maxCount": 1 | ||
| }, | ||
| { | ||
| "path": "nsg:eCode", | ||
| "name": "eCode", | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/typedlabeledontologyterm/v0.1.1/shapes/EcodeOntologyTermShape", | ||
| "maxCount": 1 | ||
| }, | ||
| { | ||
| "path": "schema:description", | ||
| "datatype": "xsd:string", | ||
| "maxCount": 1 | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,24 @@ | ||
| { | ||
| "@context": [ | ||
| "{{base}}/contexts/neurosciencegraph/core/data/v0.1.0" | ||
| ], | ||
| "@type": [ | ||
| "prov:Activity", | ||
| "nsg:StimulusExperiment" | ||
| ], | ||
| "stimulus": { | ||
| "stimulusType": { | ||
| "@id": "http://www.FIXME.org/ephys_stimuli/0000001", | ||
| "rdfs:label": "ADHPdepol" | ||
| } | ||
| }, | ||
| "used": [ | ||
| { | ||
| "@id": "{{base}}/dev/v0/data/neurosciencegraph/experiment/intrasharprecordedcell/v0.1.0/f4880a5e-3096-4527-bbf8-05d797b8c424", | ||
| "@type": [ | ||
| "nsg:IntraCellularSharpElectrodeRecordedCell", | ||
| "prov:Entity" | ||
| ] | ||
| } | ||
| ] | ||
| } |
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Update to neurosciencegraph/commons/activity/v0.1.4