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JLSteenwyk · Sep 18, 2024 · 5fd9073 · 5fd9073
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diff --git a/_sources/usage/index.rst.txt b/_sources/usage/index.rst.txt
@@ -489,7 +489,8 @@ doi: 10.1093/gbe/evw179 and Steenwyk et al., PLOS Biology
 	phykit parsimony_informative_sites <alignment>
 
 Options: |br|
-*<alignment>*: first argument after function name should be an alignment file
+*<alignment>*: first argument after function name should be an alignment file |br|
+*\\-\\-cpu*: CPUs to use to accelerate calculation
 
 |
 
@@ -549,7 +550,8 @@ and Evolution (2003), doi: 10.1016/S1055-7903(03)00057-5.
 	phykit relative_composition_variability <alignment>
 
 Options: |br|
-*<alignment>*: first argument after function name should be an alignment file
+*<alignment>*: first argument after function name should be an alignment file |br|
+*\\-\\-cpu*: CPUs to use to accelerate calculation
 
 |
 

diff --git a/usage/index.html b/usage/index.html
@@ -537,7 +537,8 @@ <h3>Parsimony informative sites<a class="headerlink" href="#parsimony-informativ
 </pre></div>
 </div>
 <p>Options: <br/>
-<em>&lt;alignment&gt;</em>: first argument after function name should be an alignment file</p>
+<em>&lt;alignment&gt;</em>: first argument after function name should be an alignment file <br/>
+<em>\-\-cpu</em>: CPUs to use to accelerate calculation</p>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
@@ -588,7 +589,8 @@ <h3>Relative composition variability<a class="headerlink" href="#relative-compos
 </pre></div>
 </div>
 <p>Options: <br/>
-<em>&lt;alignment&gt;</em>: first argument after function name should be an alignment file</p>
+<em>&lt;alignment&gt;</em>: first argument after function name should be an alignment file <br/>
+<em>\-\-cpu</em>: CPUs to use to accelerate calculation</p>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>