add ci #15

	# This is a basic workflow to help you get started with Actions

	name: CI

	# Controls when the action will run.
	# Triggers the workflow on push or pull request events
	on: [push, pull_request, workflow_dispatch]

	concurrency:
	group: ${{ github.workflow }}-${{ github.event.pull_request.number \|\| github.ref }}
	cancel-in-progress: true

	# A workflow run is made up of one or more jobs that can run sequentially or in parallel
	jobs:

	# This workflow contains a second job called "build2"
	test_aline:
	# avoid to run twice push and PR
	if: github.event_name != 'pull_request' \|\| github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name

	# The type of runner that the job will run on
	runs-on: ubuntu-latest
	services:
	docker:
	image: docker:dind
	options: --privileged --shm-size=2g
	volumes:
	- /var/run/docker.sock:/var/run/docker.sock:ro

	# Steps represent a sequence of tasks that will be executed as part of the job
	steps:
	- name: Install Nextflow dependencies
	run: sudo apt-get install openjdk-11-jdk
	- name: Install Nextflox
	run: curl -s https://get.nextflow.io \| bash && mv nextflow /usr/local/bin && chmod +x /usr/local/bin/nextflow

	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
	- uses: actions/checkout@v3
	- name: test short paired
	run: nextflow run -profile docker,test_illumina_paired aline.nf

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