remove bowtie1 from ONT test due to Segmentation fault in CI but work…

…s locally
Juke34 · Jan 16, 2025 · e4e725f · e4e725f
1 parent fe015d7
commit e4e725f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/profiles/test_ont.config b/profiles/test_ont.config
@@ -8,7 +8,7 @@ params {
     reads = "$baseDir/test/nanopore"
     genome = "$baseDir/test/yeast.fa"
     read_type = "ont"
-    aligner = 'bbmap,bowtie,bowtie2,bwaaln,bwamem,bwasw,graphmap2,hisat2,kallisto,minimap2,ngmlr,nucmer,star,subread,sublong'
+    aligner = 'bbmap,bowtie2,bwaaln,bwamem,bwasw,graphmap2,hisat2,kallisto,minimap2,ngmlr,nucmer,star,subread,sublong'
     library_type = 'U'
     star_options = '--outFilterMismatchNmax 100 --seedSearchLmax 30   --seedSearchStartLmax 30 --seedPerReadNmax 100000   --seedPerWindowNmax 100 --alignTranscriptsPerReadNmax 100000 --alignTranscriptsPerWindowNmax 10000'
     multiqc_config = "$baseDir/config/multiqc_conf.yml"