Update dependencies (#46)

* bump compat: AbstractGPs 0.4, 0.5; GPLikelihoods 0.2; ChainRulesCore 1 * bump test dependency * update examples Manifests * update VFE equivalence test for AbstractGPs 0.4 * use local implementation of KL * AD workaround attempt * bugfixes * Apply suggestions from code review Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * update docs/manifest * add Will's suggestion * redo * Update src/kldiv.jl Co-authored-by: willtebbutt <[email protected]> * revert kldiv.jl - now depending on KLDivergences=0.2.1 instead * update examples Manifests * update docs Manifest * kldivergence -> KL * Apply suggestions from code review Co-authored-by: Ross Viljoen <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: willtebbutt <[email protected]> Co-authored-by: Ross Viljoen <[email protected]>
JuliaGaussianProcesses · Sep 14, 2021 · 8075f5d · 8075f5d · st-- · Sep 14, 2021
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Showing 7 changed files with 179 additions and 178 deletions.
diff --git a/Project.toml b/Project.toml
@@ -18,13 +18,13 @@ Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 
 [compat]
-AbstractGPs = "0.3"
-ChainRulesCore = "0.10"
+AbstractGPs = "0.3, 0.4, 0.5"
+ChainRulesCore = "1"
 Distributions = "0.25"
 FastGaussQuadrature = "0.4"
 FillArrays = "0.12"
-GPLikelihoods = "0.1"
-KLDivergences = "0.1"
+GPLikelihoods = "0.1, 0.2"
+KLDivergences = "0.2.1"
 Reexport = "1"
 SpecialFunctions = "1"
 StatsBase = "0.33"

diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -6,10 +6,10 @@ uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9"
 version = "0.0.1"
 
 [[AbstractGPs]]
-deps = ["ChainRulesCore", "Distributions", "FillArrays", "KernelFunctions", "LinearAlgebra", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"]
-git-tree-sha1 = "0eb83690d554ebaaabcd7005709ba2e768aa70f5"
+deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"]
+git-tree-sha1 = "80b6c9734d00ae7518e65a0e1063772a050d04a0"
 uuid = "99985d1d-32ba-4be9-9821-2ec096f28918"
-version = "0.3.9"
+version = "0.5.1"
 
 [[ApproximateGPs]]
 deps = ["AbstractGPs", "ChainRulesCore", "Distributions", "FastGaussQuadrature", "FillArrays", "GPLikelihoods", "KLDivergences", "LinearAlgebra", "Reexport", "SpecialFunctions", "Statistics", "StatsBase"]
@@ -28,15 +28,15 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
 [[ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "f53ca8d41e4753c41cdafa6ec5f7ce914b34be54"
+git-tree-sha1 = "4ce9393e871aca86cc457d9f66976c3da6902ea7"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "0.10.13"
+version = "1.4.0"
 
 [[Compat]]
 deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "727e463cfebd0c7b999bbf3e9e7e16f254b94193"
+git-tree-sha1 = "4866e381721b30fac8dda4c8cb1d9db45c8d2994"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "3.34.0"
+version = "3.37.0"
 
 [[CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -48,9 +48,9 @@ uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b"
 version = "0.1.1"
 
 [[DataAPI]]
-git-tree-sha1 = "ee400abb2298bd13bfc3df1c412ed228061a2385"
+git-tree-sha1 = "bec2532f8adb82005476c141ec23e921fc20971b"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
-version = "1.7.0"
+version = "1.8.0"
 
 [[DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
@@ -68,19 +68,19 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 
 [[Distances]]
 deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
-git-tree-sha1 = "abe4ad222b26af3337262b8afb28fab8d215e9f8"
+git-tree-sha1 = "9f46deb4d4ee4494ffb5a40a27a2aced67bdd838"
 uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
-version = "0.10.3"
+version = "0.10.4"
 
 [[Distributed]]
 deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[Distributions]]
-deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "f389cb8974e02d7eaa6ae2ccedbbfb43174cd8e8"
+deps = ["ChainRulesCore", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"]
+git-tree-sha1 = "f4efaa4b5157e0cdb8283ae0b5428bc9208436ed"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.14"
+version = "0.25.16"
 
 [[DocStringExtensions]]
 deps = ["LibGit2"]
@@ -90,9 +90,9 @@ version = "0.8.5"
 
 [[Documenter]]
 deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"]
-git-tree-sha1 = "350dced36c11f794c6c4da5dc6493ec894e50c16"
+git-tree-sha1 = "fe0bc46b27cd3413df55859152fd70e50744025f"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-version = "0.27.5"
+version = "0.27.6"
 
 [[Downloads]]
 deps = ["ArgTools", "LibCURL", "NetworkOptions"]
@@ -106,20 +106,20 @@ version = "0.4.7"
 
 [[FillArrays]]
 deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
-git-tree-sha1 = "a3b7b041753094f3b17ffa9d2e2e07d8cace09cd"
+git-tree-sha1 = "caf289224e622f518c9dbfe832cdafa17d7c80a6"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "0.12.3"
+version = "0.12.4"
 
 [[Functors]]
-git-tree-sha1 = "39007773fd6097164ab537f78d3ac78ad2b8b695"
+git-tree-sha1 = "e2727f02325451f6b24445cd83bfa9aaac19cbe7"
 uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196"
-version = "0.2.4"
+version = "0.2.5"
 
 [[GPLikelihoods]]
-deps = ["Distributions", "Functors", "Random", "StatsFuns"]
-git-tree-sha1 = "caf19e78b8380dcac9dc3012bf44efb9cbd93c9e"
+deps = ["Distributions", "Functors", "LinearAlgebra", "Random", "StatsFuns"]
+git-tree-sha1 = "e07acc5ca79ead40c8cf0338c9357fc7fb90eea1"
 uuid = "6031954c-0455-49d7-b3b9-3e1c99afaf40"
-version = "0.1.0"
+version = "0.2.0"
 
 [[IOCapture]]
 deps = ["Logging", "Random"]
@@ -149,16 +149,16 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
 version = "0.21.2"
 
 [[KLDivergences]]
-deps = ["Distances", "Distributions", "LinearAlgebra", "PDMats", "SpecialFunctions", "StatsBase"]
-git-tree-sha1 = "6dda0f7d61bd978bdeece26c4f76c6d0631cd76e"
+deps = ["ChainRulesCore", "Distances", "Distributions", "LinearAlgebra", "PDMats", "SpecialFunctions", "StatsBase"]
+git-tree-sha1 = "b4663db8fb56053b1d1a2af80533b645eba9583a"
 uuid = "3c9cd921-3d3f-41e2-830c-e020174918cc"
-version = "0.1.3"
+version = "0.2.1"
 
 [[KernelFunctions]]
 deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "StatsBase", "TensorCore", "Test", "ZygoteRules"]
-git-tree-sha1 = "fc3fe4d33122d43f0d4e38cf264dac39830dc4f7"
+git-tree-sha1 = "3b7fceeab37b650c280eb072ffe2b868b03a5423"
 uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392"
-version = "0.10.13"
+version = "0.10.17"
 
 [[LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
@@ -184,19 +184,19 @@ deps = ["Libdl"]
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[LogExpFunctions]]
-deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
-git-tree-sha1 = "3d682c07e6dd250ed082f883dc88aee7996bf2cc"
+deps = ["ChainRulesCore", "DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
+git-tree-sha1 = "34dc30f868e368f8a17b728a1238f3fcda43931a"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.3.0"
+version = "0.3.3"
 
 [[Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[MacroTools]]
 deps = ["Markdown", "Random"]
-git-tree-sha1 = "0fb723cd8c45858c22169b2e42269e53271a6df7"
+git-tree-sha1 = "5a5bc6bf062f0f95e62d0fe0a2d99699fed82dd9"
 uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
-version = "0.5.7"
+version = "0.5.8"
 
 [[Markdown]]
 deps = ["Base64"]
@@ -208,9 +208,9 @@ uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
 
 [[Missings]]
 deps = ["DataAPI"]
-git-tree-sha1 = "2ca267b08821e86c5ef4376cffed98a46c2cb205"
+git-tree-sha1 = "bf210ce90b6c9eed32d25dbcae1ebc565df2687f"
 uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
-version = "1.0.1"
+version = "1.0.2"
 
 [[Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
@@ -351,10 +351,10 @@ uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 version = "0.33.10"
 
 [[StatsFuns]]
-deps = ["IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
-git-tree-sha1 = "20d1bb720b9b27636280f751746ba4abb465f19d"
+deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
+git-tree-sha1 = "46d7ccc7104860c38b11966dd1f72ff042f382e4"
 uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-version = "0.9.9"
+version = "0.9.10"
 
 [[SuiteSparse]]
 deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]