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RSPM changing all the time, cba!
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KasperSkytte committed Dec 2, 2021
1 parent 00f98b7 commit 264475a
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -47,7 +47,7 @@ RUN apt-get -qqy update \
&& ln -s /opt/R/${R_BASE_VERSION}/bin/Rscript /usr/local/bin/Rscript \
&& mkdir -p ~/.R \
&& echo "MAKEFLAGS = -j" > ~/.R/Makevars \
&& echo "options(repos = c(CRAN = 'https://packagemanager.rstudio.com/all/__linux__/bionic/2021-11-17+MTo2MzM5NDY2LDI6NDUyNjIxNTs1MDMxRDg3Qg'), download.file.method = 'libcurl')" >> /opt/R/${R_BASE_VERSION}/lib/R/etc/Rprofile.site \
&& echo "options(repos = c(CRAN = 'https://mirrors.dotsrc.org/cran'), download.file.method = 'libcurl')" >> /opt/R/${R_BASE_VERSION}/lib/R/etc/Rprofile.site \
&& sed -i s/^R_LIBS_USER=/#R_LIBS_USER=/g /opt/R/${R_BASE_VERSION}/lib/R/etc/Renviron \
&& R -e "install.packages('BiocManager')" \
&& R -e "BiocManager::install(version = '3.9', ask = FALSE, Ncpus = 100)" \
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