better barcoding (#74)

This commit/PR improves on an edge case in barcoding where the sequencing read has both barcodes, but one is hanging off the edge (due to the nanopore kinda falling off at the last ~10bp). We do this by also considering the primer used to amplify the dual barcode, and taking the score from there. Included is a regression test, as well as all the default dual barcodes that I personally use.
Koeng101 · Apr 2, 2024 · 85e8820 · 85e8820
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diff --git a/README.md b/README.md
@@ -71,6 +71,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 ## [Unreleased]
+- Updated barcoding functions to handle edge case of hanging-edge barcodes [#74](https://github.com/Koeng101/dnadesign/pull/74)
 - Updated megamash to use int instead of uint for minimal Kmer counts (so you can use -1) [#73](https://github.com/Koeng101/dnadesign/pull/73)
 - Added bcftools to external [#72](https://github.com/Koeng101/dnadesign/pull/72)
 - Fixed bug in PCR where certain matching primers wouldn't create any amplicons [#71](https://github.com/Koeng101/dnadesign/pull/71)