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adapted usePost to rust
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@mnneely
mnneely committed Jan 3, 2025
1 parent 9aabf21 commit cdc9989
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88 changes: 44 additions & 44 deletions 1/outputs/log.txt
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Expand Up @@ -13,15 +13,15 @@
00h 00m 01s INFO {Cycle=13}: pmcore::algorithms::npag: Objective function = 474.1612
00h 00m 01s INFO {Cycle=14}: pmcore::algorithms::npag: Objective function = 470.8664
00h 00m 01s INFO {Cycle=15}: pmcore::algorithms::npag: Objective function = 470.2052
00h 00m 02s INFO {Cycle=16}: pmcore::algorithms::npag: Objective function = 469.4483
00h 00m 02s INFO {Cycle=17}: pmcore::algorithms::npag: Objective function = 469.4433
00h 00m 02s INFO {Cycle=18}: pmcore::algorithms::npag: Objective function = 469.4317
00h 00m 02s INFO {Cycle=19}: pmcore::algorithms::npag: Objective function = 469.4156
00h 00m 02s INFO {Cycle=20}: pmcore::algorithms::npag: Objective function = 469.4105
00h 00m 02s INFO {Cycle=21}: pmcore::algorithms::npag: Objective function = 469.4105
00h 00m 02s INFO {Cycle=22}: pmcore::algorithms::npag: Objective function = 467.1264
00h 00m 02s INFO {Cycle=23}: pmcore::algorithms::npag: Objective function = 465.6323
00h 00m 02s INFO {Cycle=24}: pmcore::algorithms::npag: Objective function = 465.0523
00h 00m 01s INFO {Cycle=16}: pmcore::algorithms::npag: Objective function = 469.4483
00h 00m 01s INFO {Cycle=17}: pmcore::algorithms::npag: Objective function = 469.4433
00h 00m 01s INFO {Cycle=18}: pmcore::algorithms::npag: Objective function = 469.4317
00h 00m 01s INFO {Cycle=19}: pmcore::algorithms::npag: Objective function = 469.4156
00h 00m 01s INFO {Cycle=20}: pmcore::algorithms::npag: Objective function = 469.4105
00h 00m 01s INFO {Cycle=21}: pmcore::algorithms::npag: Objective function = 469.4105
00h 00m 01s INFO {Cycle=22}: pmcore::algorithms::npag: Objective function = 467.1264
00h 00m 01s INFO {Cycle=23}: pmcore::algorithms::npag: Objective function = 465.6323
00h 00m 01s INFO {Cycle=24}: pmcore::algorithms::npag: Objective function = 465.0523
00h 00m 02s INFO {Cycle=25}: pmcore::algorithms::npag: Objective function = 464.7215
00h 00m 02s INFO {Cycle=26}: pmcore::algorithms::npag: Objective function = 464.2844
00h 00m 02s INFO {Cycle=27}: pmcore::algorithms::npag: Objective function = 463.8434
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00h 00m 02s INFO {Cycle=57}: pmcore::algorithms::npag: Objective function = 461.0893
00h 00m 02s INFO {Cycle=58}: pmcore::algorithms::npag: Objective function = 461.0437
00h 00m 02s INFO {Cycle=59}: pmcore::algorithms::npag: Objective function = 461.0019
00h 00m 03s INFO {Cycle=60}: pmcore::algorithms::npag: Objective function = 461.0019
00h 00m 03s INFO {Cycle=61}: pmcore::algorithms::npag: Objective function = 460.3306
00h 00m 03s INFO {Cycle=62}: pmcore::algorithms::npag: Objective function = 460.0289
00h 00m 03s INFO {Cycle=63}: pmcore::algorithms::npag: Objective function = 459.8340
00h 00m 03s INFO {Cycle=64}: pmcore::algorithms::npag: Objective function = 459.7339
00h 00m 03s INFO {Cycle=65}: pmcore::algorithms::npag: Objective function = 459.6819
00h 00m 03s INFO {Cycle=66}: pmcore::algorithms::npag: Objective function = 459.4953
00h 00m 03s INFO {Cycle=67}: pmcore::algorithms::npag: Objective function = 459.3722
00h 00m 03s INFO {Cycle=68}: pmcore::algorithms::npag: Objective function = 459.2861
00h 00m 03s INFO {Cycle=69}: pmcore::algorithms::npag: Objective function = 459.2100
00h 00m 03s INFO {Cycle=70}: pmcore::algorithms::npag: Objective function = 459.1259
00h 00m 03s INFO {Cycle=71}: pmcore::algorithms::npag: Objective function = 459.0354
00h 00m 03s INFO {Cycle=72}: pmcore::algorithms::npag: Objective function = 458.9428
00h 00m 03s INFO {Cycle=73}: pmcore::algorithms::npag: Objective function = 458.8542
00h 00m 03s INFO {Cycle=74}: pmcore::algorithms::npag: Objective function = 458.7710
00h 00m 03s INFO {Cycle=75}: pmcore::algorithms::npag: Objective function = 458.6819
00h 00m 02s INFO {Cycle=60}: pmcore::algorithms::npag: Objective function = 461.0019
00h 00m 02s INFO {Cycle=61}: pmcore::algorithms::npag: Objective function = 460.3306
00h 00m 02s INFO {Cycle=62}: pmcore::algorithms::npag: Objective function = 460.0289
00h 00m 02s INFO {Cycle=63}: pmcore::algorithms::npag: Objective function = 459.8340
00h 00m 02s INFO {Cycle=64}: pmcore::algorithms::npag: Objective function = 459.7339
00h 00m 02s INFO {Cycle=65}: pmcore::algorithms::npag: Objective function = 459.6819
00h 00m 02s INFO {Cycle=66}: pmcore::algorithms::npag: Objective function = 459.4953
00h 00m 02s INFO {Cycle=67}: pmcore::algorithms::npag: Objective function = 459.3722
00h 00m 02s INFO {Cycle=68}: pmcore::algorithms::npag: Objective function = 459.2861
00h 00m 02s INFO {Cycle=69}: pmcore::algorithms::npag: Objective function = 459.2100
00h 00m 02s INFO {Cycle=70}: pmcore::algorithms::npag: Objective function = 459.1259
00h 00m 02s INFO {Cycle=71}: pmcore::algorithms::npag: Objective function = 459.0354
00h 00m 02s INFO {Cycle=72}: pmcore::algorithms::npag: Objective function = 458.9428
00h 00m 02s INFO {Cycle=73}: pmcore::algorithms::npag: Objective function = 458.8542
00h 00m 02s INFO {Cycle=74}: pmcore::algorithms::npag: Objective function = 458.7710
00h 00m 02s INFO {Cycle=75}: pmcore::algorithms::npag: Objective function = 458.6819
00h 00m 03s INFO {Cycle=76}: pmcore::algorithms::npag: Objective function = 458.5832
00h 00m 03s INFO {Cycle=77}: pmcore::algorithms::npag: Objective function = 458.4731
00h 00m 03s INFO {Cycle=78}: pmcore::algorithms::npag: Objective function = 458.3640
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00h 00m 03s INFO {Cycle=87}: pmcore::algorithms::npag: Objective function = 457.6580
00h 00m 03s INFO {Cycle=88}: pmcore::algorithms::npag: Objective function = 457.5459
00h 00m 03s INFO {Cycle=89}: pmcore::algorithms::npag: Objective function = 457.4132
00h 00m 04s INFO {Cycle=90}: pmcore::algorithms::npag: Objective function = 457.3786
00h 00m 04s INFO {Cycle=91}: pmcore::algorithms::npag: Objective function = 457.2976
00h 00m 04s INFO {Cycle=92}: pmcore::algorithms::npag: Objective function = 457.2540
00h 00m 04s INFO {Cycle=93}: pmcore::algorithms::npag: Objective function = 457.2052
00h 00m 04s INFO {Cycle=94}: pmcore::algorithms::npag: Objective function = 457.1486
00h 00m 04s INFO {Cycle=95}: pmcore::algorithms::npag: Objective function = 457.1211
00h 00m 04s INFO {Cycle=96}: pmcore::algorithms::npag: Objective function = 457.1039
00h 00m 04s INFO {Cycle=97}: pmcore::algorithms::npag: Objective function = 457.0925
00h 00m 04s INFO {Cycle=98}: pmcore::algorithms::npag: Objective function = 457.0083
00h 00m 04s INFO {Cycle=99}: pmcore::algorithms::npag: Objective function = 456.9862
00h 00m 04s INFO {Cycle=100}: pmcore::algorithms::npag: Objective function = 456.9314
00h 00m 04s WARN {Cycle=100}: pmcore::algorithms::npag: Maximum number of cycles reached
00h 00m 04s INFO pmcore::algorithms::routines::output: Cycles written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/cycles.csv"
00h 00m 04s INFO pmcore::algorithms::routines::output: Observations written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/obs.csv"
00h 00m 04s INFO pmcore::algorithms::routines::output: Population parameter distribution written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/theta.csv"
00h 00m 04s INFO pmcore::algorithms::routines::output: Observations with predictions written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/op.csv"
00h 00m 05s INFO pmcore::algorithms::routines::output: Predictions written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/pred.csv"
00h 00m 05s INFO pmcore::algorithms::routines::output: Covariates written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/covs.csv"
00h 00m 05s INFO pmcore::algorithms::routines::output: Posterior parameters written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/posterior.csv"
00h 00m 03s INFO {Cycle=90}: pmcore::algorithms::npag: Objective function = 457.3786
00h 00m 03s INFO {Cycle=91}: pmcore::algorithms::npag: Objective function = 457.2976
00h 00m 03s INFO {Cycle=92}: pmcore::algorithms::npag: Objective function = 457.2540
00h 00m 03s INFO {Cycle=93}: pmcore::algorithms::npag: Objective function = 457.2052
00h 00m 03s INFO {Cycle=94}: pmcore::algorithms::npag: Objective function = 457.1486
00h 00m 03s INFO {Cycle=95}: pmcore::algorithms::npag: Objective function = 457.1211
00h 00m 03s INFO {Cycle=96}: pmcore::algorithms::npag: Objective function = 457.1039
00h 00m 03s INFO {Cycle=97}: pmcore::algorithms::npag: Objective function = 457.0925
00h 00m 03s INFO {Cycle=98}: pmcore::algorithms::npag: Objective function = 457.0083
00h 00m 03s INFO {Cycle=99}: pmcore::algorithms::npag: Objective function = 456.9862
00h 00m 03s INFO {Cycle=100}: pmcore::algorithms::npag: Objective function = 456.9314
00h 00m 03s WARN {Cycle=100}: pmcore::algorithms::npag: Maximum number of cycles reached
00h 00m 03s INFO pmcore::algorithms::routines::output: Cycles written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/cycles.csv"
00h 00m 03s INFO pmcore::algorithms::routines::output: Observations written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/obs.csv"
00h 00m 03s INFO pmcore::algorithms::routines::output: Population parameter distribution written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/theta.csv"
00h 00m 03s INFO pmcore::algorithms::routines::output: Observations with predictions written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/op.csv"
00h 00m 04s INFO pmcore::algorithms::routines::output: Predictions written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/pred.csv"
00h 00m 04s INFO pmcore::algorithms::routines::output: Covariates written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/covs.csv"
00h 00m 04s INFO pmcore::algorithms::routines::output: Posterior parameters written to "/Users/mneely/LAPK/Development/Pmetrics_rust/1/outputs/posterior.csv"
72 changes: 36 additions & 36 deletions 1/outputs/report.html
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4 changes: 2 additions & 2 deletions R/PM_cov.R
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Expand Up @@ -119,12 +119,12 @@ PM_cov <- R6::R6Class(

post_mean <- posts %>%
group_by(id) %>%
summarise(across(-c(point, prob), \(x) weighted.mean(x = x, w = prob))) %>%
summarise(across(-c(point, prob), \(x) wtd.mean(x = x, weights = prob))) %>%
mutate(icen = "mean")

post_med <- posts %>%
group_by(id) %>%
reframe(across(-c(point, prob), \(x) weighted_median(x, prob))) %>%
reframe(across(-c(point, prob), \(x) wtd.quantile(x, prob, 0.5))) %>%
mutate(icen = "median")


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