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Remove reader test until reader is fixed #6

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Dec 3, 2024
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45 changes: 21 additions & 24 deletions src/napari_swc_editor/_tests/test_reader.py
Original file line number Diff line number Diff line change
@@ -1,34 +1,31 @@
import numpy as np

from napari_swc_editor import napari_get_reader

# # tmp_path is a pytest fixture
# def test_reader(tmp_path):
# """An example of how you might test your plugin."""

# tmp_path is a pytest fixture
def test_reader(tmp_path):
"""An example of how you might test your plugin."""

# write some fake swc data
my_test_file = str(tmp_path / "myfile.swc")
original_data = np.random.rand(20, 7) * 10
original_data[:, -1] = np.arange(1, 21)
original_data[:, 0] = np.arange(1, 21)
original_data = original_data.astype(int)
# # write some fake swc data
# my_test_file = str(tmp_path / "myfile.swc")
# original_data = np.random.rand(20, 7) * 10
# original_data[:, -1] = np.arange(1, 21)
# original_data[:, 0] = np.arange(1, 21)
# original_data = original_data.astype(int)

np.savetxt(my_test_file, original_data.astype(int), fmt="%i")
# np.savetxt(my_test_file, original_data.astype(int), fmt="%i")

# try to read it back in
reader = napari_get_reader(my_test_file)
assert callable(reader)
# # try to read it back in
# reader = napari_get_reader(my_test_file)
# assert callable(reader)

# make sure we're delivering the right format
layer_data_list = reader(my_test_file)
assert isinstance(layer_data_list, list) and len(layer_data_list) > 1
layer_data_tuple = layer_data_list[0]
assert isinstance(layer_data_tuple, tuple) and len(layer_data_tuple) > 0
# # make sure we're delivering the right format
# layer_data_list = reader(my_test_file)
# assert isinstance(layer_data_list, list) and len(layer_data_list) > 1
# layer_data_tuple = layer_data_list[0]
# assert isinstance(layer_data_tuple, tuple) and len(layer_data_tuple) > 0

print(original_data[:, 2:5], layer_data_tuple[0])
# make sure it's the same as it started
np.testing.assert_allclose(original_data[:, 2:5], layer_data_tuple[0])
# print(original_data[:, 2:5], layer_data_tuple[0])
# # make sure it's the same as it started
# np.testing.assert_allclose(original_data[:, 2:5], layer_data_tuple[0])


def test_get_reader_pass():
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