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Automatic tool/resource-list update (elixir-europe#302)
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* Update tool/resource_list.yaml

* Update tool_and_resource_list.yml

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Co-authored-by: bedroesb <[email protected]>
Co-authored-by: Bert Droesbeke <[email protected]>
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3 people authored May 28, 2024
1 parent 6a7e7c4 commit b80fa61
Showing 1 changed file with 14 additions and 2 deletions.
16 changes: 14 additions & 2 deletions _data/tool_and_resource_list.yml
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name: Pathogens Portal
registry:
fairsharing: a085b2
tess: Pathogens Portal
url: https://www.pathogensportal.org
- description: The European Health Data Space is a health specific ecosystem comprised of rules, common standards and practices, infrastructures and a governance framework that aims at empowering individuals through increased digital access to and control of their electronic personal health data, at national level and EU-wide.
id: ehds
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registry:
tess: Quarto
url: https://quarto.org/
- description: Bcftools is a set of tools for working with variant calls in the VCF format.
- description: Bcftools is a set of tools for working with variant calls in the VCF format.
id: bcftools
name: Bcftools
registry:
biotools: bcftools
url: https://samtools.github.io/bcftools/bcftools.html
- description: Qualimap is a quality control tool that assesses the quality of the sequencing data at different stages of the analysis pipeline, including read mapping, coverage, and expression analysis.
id: qualimap
name: Qualimap
registry:
biotools: qualimap
url: http://qualimap.conesalab.org/
- description: GATK is a widely used tool for variant calling and genotyping from NGS data.
id: gatk
name: Genome Analysis Toolkit (GATK)
registry:
biotools: gatk
url: https://gatk.broadinstitute.org/hc/en-us
- description: Picard is a suite of tools that provides quality control and processing of NGS data, including duplicate read removal, format conversion, and alignment.
id: picard
name: Picard
registry:
biotools: picard_tools
url: https://broadinstitute.github.io/picard/
- description: Trimmomatic is a tool used for the removal of adapter sequences, low-quality reads, and sequences with ambiguous bases from NGS data.
id: trimmomatic
name: Trimmomatic
registry:
biotools: trimmomatic
tess: Trimmomatic
url: http://www.usadellab.org/cms/?page=trimmomatic
- description: FastQ Screen is a quality control tool used to detect contamination in sequencing data (FASTQ files).
id: fastqc-screen
name: FastQC Screen
url: https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/
- description: GRAF pop is a software tool that infers the subject ancestry.
- description: GRAF pop is a software tool that infers the subject ancestry.
id: graf-pop
name: GRAF pop
url: https://pubmed.ncbi.nlm.nih.gov/31151998/
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