Update tests to work on all systems #321
Workflow file for this run
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| name: Tests for SpeckCn2 | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - ready_for_review | |
| workflow_dispatch: | |
| jobs: | |
| Build-n-test: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-latest', 'macos-latest'] | |
| python-version: ['3.12'] | |
| gcc-version: ['12'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'true' | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| id: cache-virtualenv | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }}-${{ matrix.os }}-${{ matrix.python-version }} | |
| - name: Download ResNet results | |
| id: download-artifact | |
| uses: dawidd6/action-download-artifact@v6 | |
| with: | |
| github_token: ${{secrets.GITHUB_TOKEN}} | |
| workflow: generate_test_reference.yaml | |
| workflow_search: false | |
| workflow_conclusion: success | |
| name: ResNet-results-${{ matrix.python-version }}-${{ matrix.os }} | |
| path: Model_test_resnet_score | |
| if_no_artifact_found: fail | |
| - name: Download SCNN results | |
| id: download-artifact2 | |
| uses: dawidd6/action-download-artifact@v6 | |
| with: | |
| github_token: ${{secrets.GITHUB_TOKEN}} | |
| workflow: generate_test_reference.yaml | |
| workflow_search: false | |
| workflow_conclusion: success | |
| name: SCNN-results-${{ matrix.python-version }}-${{ matrix.os }} | |
| path: Model_test_scnn_score | |
| if_no_artifact_found: fail | |
| - name: Download ResNet weights | |
| id: download-artifact3 | |
| uses: dawidd6/action-download-artifact@v6 | |
| with: | |
| github_token: ${{secrets.GITHUB_TOKEN}} | |
| workflow: generate_test_reference.yaml | |
| workflow_search: false | |
| workflow_conclusion: success | |
| name: ResNet-weights-${{ matrix.python-version }}-${{ matrix.os }} | |
| path: Model_test_resnet_states | |
| if_no_artifact_found: fail | |
| - name: Download SCNN weights | |
| id: download-artifact4 | |
| uses: dawidd6/action-download-artifact@v6 | |
| with: | |
| github_token: ${{secrets.GITHUB_TOKEN}} | |
| workflow: generate_test_reference.yaml | |
| workflow_search: false | |
| workflow_conclusion: success | |
| name: SCNN-weights-${{ matrix.python-version }}-${{ matrix.os }} | |
| path: Model_test_scnn_states | |
| if_no_artifact_found: fail | |
| - name: Move test baseline to the correct location | |
| run: | | |
| mkdir -p tests/test_data/speckles/expected_results | |
| rm -rf tests/test_data/speckles/expected_results/* | |
| mv Model_test_*_score tests/test_data/speckles/expected_results/. | |
| mkdir -p tests/test_data/speckles/expected_model_weights | |
| rm -rf tests/test_data/speckles/expected_model_weights/* | |
| mv Model_test_*_states tests/test_data/speckles/expected_model_weights/. | |
| - name: Install Fortran compiler on Ubuntu | |
| if: matrix.os == 'ubuntu-latest' | |
| run: sudo apt-get update && sudo apt-get install -y gfortran | |
| - name: Install Fortran compiler on macOS | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| brew install gcc@${{ matrix.gcc-version }} | |
| echo "FC=gfortran-${{ matrix.gcc-version }}" >> "$GITHUB_ENV" | |
| echo "CC=gcc-${{ matrix.gcc-version }}" >> "$GITHUB_ENV" | |
| - name: Install Fortran compiler on Windows | |
| if: matrix.os == 'windows-latest' | |
| run: choco install mingw | |
| - name: Install dependencies | |
| if: steps.cache-virtualenv.outputs.cache-hit != 'true' | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e .[develop] | |
| - name: Clean Pytest Cache | |
| run: rm -rf .pytest_cache | |
| - name: Test with pytest and coverage | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| coverage run -p -m pytest | |
| - name: Test with pytest and coverage | |
| if: matrix.os != 'ubuntu-latest' | |
| run: | | |
| python -m pytest | |
| - name: Upload test results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: testfail-images-${{ matrix.python-version }}-${{ matrix.os }} | |
| path: .tests/image_diff/ | |
| - name: Upload ResNet images | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: resnet-images-testfail-${{ matrix.python-version }}-${{ matrix.os }} | |
| path: tests/test_data/speckles/Model_test_resnet_score | |
| - name: Upload SCNN images | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: scnn-images-testfail-${{ matrix.python-version }}-${{ matrix.os }} | |
| path: tests/test_data/speckles/Model_test_scnn_score | |
| - name: Upload ResNet weights | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: resnet-weights-testfail-${{ matrix.python-version }}-${{ matrix.os }} | |
| path: tests/test_data/speckles/Model_test_resnet_states | |
| - name: Upload SCNN weights | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: scnn-weights-testfail-${{ matrix.python-version }}-${{ matrix.os }} | |
| path: tests/test_data/speckles/Model_test_scnn_states | |
| - name: Combine | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| coverage combine | |
| - name: Report coverage | |
| run: | | |
| coverage json | |
| export TOTAL=$(python -c "import json;print(json.load(open('coverage.json'))['totals']['percent_covered_display'])") | |
| echo "total=$TOTAL" >> $GITHUB_ENV | |
| echo "### Total coverage: ${TOTAL}%" >> $GITHUB_STEP_SUMMARY | |
| echo $'\n```' >> $GITHUB_STEP_SUMMARY | |
| coverage report >> $GITHUB_STEP_SUMMARY | |
| echo $'\n```' >> $GITHUB_STEP_SUMMARY | |
| - name: Make coverage badge | |
| if: github.ref == 'refs/heads/main' && matrix.os == 'ubuntu-latest' | |
| uses: schneegans/[email protected] | |
| with: | |
| auth: ${{ secrets.GIST_SECRET }} | |
| gistID: ee30d5a40792fc1de92e9dcf0d0e092a | |
| filename: covbadge.json | |
| label: Coverage | |
| message: ${{ env.total }}% | |
| minColorRange: 50 | |
| maxColorRange: 90 | |
| valColorRange: ${{ env.total }} |