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update pyproject.toml accordingly
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@marinegor
marinegor committed Dec 18, 2024
1 parent fa2dbd8 commit f83109d
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80 changes: 24 additions & 56 deletions package/pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -139,81 +139,49 @@ tables\.py
'''
extend-exclude = '''
(
__pycache__
| MDAnalysis/analysis/align\.py
__pycache__
| MDAnalysis/core/selection\.py
| MDAnalysis/analysis/atomicdistances\.py
| MDAnalysis/analysis/base\.py
| MDAnalysis/analysis/bat\.py
| MDAnalysis/analysis/contacts\.py
| MDAnalysis/analysis/dasktimeseries\.py
| MDAnalysis/analysis/density\.py
| MDAnalysis/topology/CMSParser\.py
| MDAnalysis/topology/__init__\.py
| MDAnalysis/coordinates/XDR\.py
| MDAnalysis/core/selection\.py
| MDAnalysis/analysis/diffusionmap\.py
| MDAnalysis/analysis/distances\.py
| MDAnalysis/analysis/encore/clustering/cluster\.py
| MDAnalysis/analysis/encore/confdistmatrix\.py
| MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod\.py
| MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality\.py
| MDAnalysis/analysis/encore/similarity\.py
| MDAnalysis/analysis/encore/utils\.py
| MDAnalysis/analysis/helix_analysis\.py
| MDAnalysis/analysis/hydrogenbonds/wbridge_analysis\.py
| MDAnalysis/analysis/legacy/x3dna\.py
| MDAnalysis/analysis/lineardensity\.py
| MDAnalysis/analysis/nucleicacids\.py
| MDAnalysis/analysis/psa\.py
| MDAnalysis/analysis/rms\.py
| MDAnalysis/analysis/align\.py
| MDAnalysis/analysis/dasktimeseries\.py
| MDAnalysis/coordinates/H5MD\.py
| MDAnalysis/coordinates/MMCIF\.py
| MDAnalysis/coordinates/__init__\.py
| MDAnalysis/topology/MMCIFParser\.py
| MDAnalysis/topology/PDBParser\.py
| MDAnalysis/topology/__init__\.py
| MDAnalysis/topology/tpr/utils\.py
| MDAnalysis/coordinates/CIF\.py
| MDAnalysis/coordinates/PDBx\.py
| MDAnalysis/coordinates/__init__\.py
| MDAnalysis/topology/PDBxParser\.py
| MDAnalysis/topology/__init__\.py
| MDAnalysis/coordinates/base\.py
| MDAnalysis/core/universe\.py
| MDAnalysis/topology/base\.py
| MDAnalysis/analysis/hydrogenbonds/hbond_analysis\.py
| MDAnalysis/analysis/sasa\.py
| MDAnalysis/analysis/waterdynamics\.py
| MDAnalysis/converters/ParmEd\.py
| MDAnalysis/converters/RDKit\.py
| MDAnalysis/coordinates/DCD\.py
| MDAnalysis/coordinates/DLPoly\.py
| MDAnalysis/coordinates/DMS\.py
| MDAnalysis/coordinates/FHIAIMS\.py
| MDAnalysis/coordinates/GMS\.py
| MDAnalysis/coordinates/GRO\.py
| MDAnalysis/coordinates/H5MD\.py
| MDAnalysis/coordinates/MMCIF\.py
| MDAnalysis/coordinates/MOL2\.py
| MDAnalysis/coordinates/PDB\.py
| MDAnalysis/coordinates/PQR\.py
| MDAnalysis/coordinates/ParmEd\.py
| MDAnalysis/coordinates/TRJ\.py
| MDAnalysis/coordinates/TRR\.py
| MDAnalysis/coordinates/TRZ\.py
| MDAnalysis/coordinates/TXYZ\.py
| MDAnalysis/coordinates/XDR\.py
| MDAnalysis/coordinates/XTC\.py
| MDAnalysis/coordinates/XYZ\.py
| MDAnalysis/coordinates/__init__\.py
| MDAnalysis/coordinates/base\.py
| MDAnalysis/coordinates/chain\.py
| MDAnalysis/coordinates/chemfiles\.py
| MDAnalysis/coordinates/core\.py
| MDAnalysis/coordinates/memory\.py
| MDAnalysis/coordinates/timestep.pyx
| MDAnalysis/core/groups\.py
| MDAnalysis/core/selection\.py
| MDAnalysis/core/topology\.py
| MDAnalysis/core/topologyattrs\.py
| MDAnalysis/core/topologyobjects\.py
| MDAnalysis/core/universe\.py
| MDAnalysis/due\.py
| MDAnalysis/selections/base\.py
| MDAnalysis/topology/CMSParser\.py
| MDAnalysis/topology/GSDParser\.py
| MDAnalysis/topology/HoomdXMLParser\.py
| MDAnalysis/topology/ITPParser\.py
| MDAnalysis/topology/LAMMPSParser\.py
| MDAnalysis/topology/MMCIFParser\.py
| MDAnalysis/topology/PDBParser\.py
| MDAnalysis/topology/PSFParser\.py
| MDAnalysis/topology/ParmEdParser\.py
| MDAnalysis/topology/TPRParser\.py
| MDAnalysis/topology/__init__\.py
| MDAnalysis/topology/base\.py
| MDAnalysis/topology/core\.py
| MDAnalysis/topology/tpr/utils\.py
)
'''
required-version = '24'
81 changes: 20 additions & 61 deletions testsuite/pyproject.toml
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Expand Up @@ -167,67 +167,26 @@ setup\.py
extend-exclude = '''
(
__pycache__
| MDAnalysisTests/analysis/conftest.py
| MDAnalysisTests/analysis/test_align.py
| MDAnalysisTests/analysis/test_atomicdistances.py
| MDAnalysisTests/analysis/test_contacts.py
| MDAnalysisTests/analysis/test_data.py
| MDAnalysisTests/analysis/test_density.py
| MDAnalysisTests/analysis/test_diffusionmap.py
| MDAnalysisTests/analysis/test_distances.py
| MDAnalysisTests/analysis/test_encore.py
| MDAnalysisTests/analysis/test_gnm.py
| MDAnalysisTests/analysis/test_helix_analysis.py
| MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py
| MDAnalysisTests/analysis/test_lineardensity.py
| MDAnalysisTests/analysis/test_nucleicacids.py
| MDAnalysisTests/analysis/test_rms.py
| MDAnalysisTests/analysis/test_sasa.py
| MDAnalysisTests/auxiliary/base.py
| MDAnalysisTests/converters/test_parmed.py
| MDAnalysisTests/converters/test_parmed_parser.py
| MDAnalysisTests/converters/test_rdkit.py
| MDAnalysisTests/coordinates/base.py
| MDAnalysisTests/coordinates/reference.py
| MDAnalysisTests/coordinates/test_chainreader.py
| MDAnalysisTests/coordinates/test_chemfiles.py
| MDAnalysisTests/coordinates/test_dlpoly.py
| MDAnalysisTests/coordinates/test_dms.py
| MDAnalysisTests/coordinates/test_fhiaims.py
| MDAnalysisTests/coordinates/test_gms.py
| MDAnalysisTests/coordinates/test_gsd.py
| MDAnalysisTests/coordinates/test_h5md.py
| MDAnalysisTests/coordinates/test_memory.py
| MDAnalysisTests/coordinates/test_mmcif.py
| MDAnalysisTests/coordinates/test_namdbin.py
| MDAnalysisTests/coordinates/test_netcdf.py
| MDAnalysisTests/coordinates/test_pqr.py
| MDAnalysisTests/coordinates/test_reader_api.py
| MDAnalysisTests/coordinates/test_trz.py
| MDAnalysisTests/coordinates/test_writer_api.py
| MDAnalysisTests/coordinates/test_xdr.py
| MDAnalysisTests/coordinates/test_xyz.py
| MDAnalysisTests/core/test_atomselections.py
| MDAnalysisTests/core/test_groups.py
| MDAnalysisTests/core/test_segment.py
| MDAnalysisTests/core/test_topologyobjects.py
| MDAnalysisTests/core/test_universe.py
| MDAnalysisTests/datafiles.py
| MDAnalysisTests/formats/test_libdcd.py
| MDAnalysisTests/import/fork_called.py
| MDAnalysisTests/parallelism/test_multiprocessing.py
| MDAnalysisTests/topology/test_gsd.py
| MDAnalysisTests/topology/test_mmcif.py
| MDAnalysisTests/topology/test_pqr.py
| MDAnalysisTests/topology/test_top.py
| MDAnalysisTests/util.py
| MDAnalysisTests/utils/test_authors.py
| MDAnalysisTests/utils/test_modelling.py
| MDAnalysisTests/utils/test_persistence.py
| MDAnalysisTests/utils/test_pickleio.py
| MDAnalysisTests/utils/test_transformations.py
| MDAnalysisTests/utils/test_units.py
| MDAnalysisTests/visualization/test_streamlines.py
| testsuite/MDAnalysisTests/core/test_atomselections\.py
| testsuite/MDAnalysisTests/analysis/test_atomicdistances\.py
| testsuite/MDAnalysisTests/coordinates/test_xdr\.py
| testsuite/MDAnalysisTests/core/test_atomselections\.py
| testsuite/MDAnalysisTests/datafiles\.py
| testsuite/MDAnalysisTests/analysis/conftest\.py
| testsuite/MDAnalysisTests/analysis/test_diffusionmap\.py
| testsuite/MDAnalysisTests/analysis/conftest\.py
| testsuite/MDAnalysisTests/analysis/test_align\.py
| testsuite/MDAnalysisTests/coordinates/test_mmcif\.py
| testsuite/MDAnalysisTests/datafiles\.py
| testsuite/MDAnalysisTests/topology/test_mmcif\.py
| testsuite/MDAnalysisTests/coordinates/test_cif\.py
| testsuite/MDAnalysisTests/analysis/test_encore\.py
| testsuite/MDAnalysisTests/parallelism/test_multiprocessing\.py
| testsuite/MDAnalysisTests/coordinates/base\.py
| testsuite/MDAnalysisTests/coordinates/test_gro\.py
| testsuite/MDAnalysisTests/topology/base\.py
| testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis\.py
| testsuite/MDAnalysisTests/analysis/test_sasa\.py
)
'''
required-version = '24'

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