Unified and ensemble cell typing #90
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stemangiola
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Dec 16, 2024
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Added code to perform the cell type label unification across Azimuth (L2), Blueprint (fine labels), Monaco (fine labels) and cellxgene. Following cell type unification, a tree-based ensemble algorithm is developed that attempts to identify the lowest node in the immune cell type hierarchy for each cell where most methods agree. If such a node does not exist, then the lowest common ancestral node is allocated. As such, nodes can be annotated at various hierarchies.