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feat: update readme
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nahid18 committed Jun 16, 2024
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Expand Up @@ -91,7 +91,7 @@ print(proj@diversity@chao1)
print(proj@diversity@gini_coeff)
```

### 2.2 Visualization with diversity metrics
### 2.2 Diversity Visualization

```r
reTCR::plot_diversity_index(proj@diversity@shannon, "shannon_index", "cmv_status")
Expand Down Expand Up @@ -134,7 +134,7 @@ print(proj@clonality@abundance_top)
print(proj@clonality@abundance_rare)
```

## 3.2 Visualization with clonality metrics
## 3.2 Clonality Visualization

```r
# let's store clonal proportion in `clonal_data`
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