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@NCI-GDC

Genomic Data Commons

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  1. gdc-workflow-overview gdc-workflow-overview Public

    Overview of GDC Harmonization Workflows

    27 9

  2. gdc-client gdc-client Public

    GDC Data Transfer Tool

    Python 148 40

  3. gdcdatamodel gdcdatamodel Public

    Translation layer between the GDC Data Dictionary and psqlgraph

    Python 28 3

  4. gdcdictionary gdcdictionary Public

    Data dictionary for the GDC

    Python 52 37

  5. psqlgraph psqlgraph Public

    Library for graph-like storage in postgresql using sqlalchemy

    Python 22 6

Repositories

Showing 10 of 84 repositories
  • gdc-docs Public Forked from NCIP/gdc-docs

    Official repository for GDC User Guides in Markdown format

    NCI-GDC/gdc-docs’s past year of commit activity
    JavaScript 60 Apache-2.0 44 0 17 Updated Feb 28, 2025
  • gdc-frontend-framework Public
    NCI-GDC/gdc-frontend-framework’s past year of commit activity
    TypeScript 10 Apache-2.0 0 0 12 Updated Feb 28, 2025
  • gdc-rnaseq-cwl Public

    GDC RNA-Seq STAR 2-Pass Workflow

    NCI-GDC/gdc-rnaseq-cwl’s past year of commit activity
    Common Workflow Language 2 Apache-2.0 8 0 2 Updated Feb 28, 2025
  • gdc-rnaseq-tool Public

    Utility scripts for RNA-seq workflows

    NCI-GDC/gdc-rnaseq-tool’s past year of commit activity
    Python 1 Apache-2.0 1 1 2 Updated Feb 27, 2025
  • bio_qcmetrics_tool Public

    Framework for serializing QC metrics into different formats for bioinformatics workflows

    NCI-GDC/bio_qcmetrics_tool’s past year of commit activity
    Python 0 Apache-2.0 0 0 1 Updated Feb 26, 2025
  • gdc-models Public

    Git repository centrally stores and serves GDC data models defined in static YAML files

    NCI-GDC/gdc-models’s past year of commit activity
    Python 3 1 4 1 Updated Feb 26, 2025
  • psqlgraph Public

    Library for graph-like storage in postgresql using sqlalchemy

    NCI-GDC/psqlgraph’s past year of commit activity
    Python 22 Apache-2.0 6 5 6 Updated Feb 25, 2025
  • muse-tool Public

    GDC MuSE docker

    NCI-GDC/muse-tool’s past year of commit activity
    Python 0 Apache-2.0 1 0 2 Updated Feb 20, 2025
  • varscan-tool Public

    GDC VarScan2 docker

    NCI-GDC/varscan-tool’s past year of commit activity
    Python 1 Apache-2.0 1 0 2 Updated Feb 20, 2025
  • merge-sqlite Public
    NCI-GDC/merge-sqlite’s past year of commit activity
    Python 0 GPL-3.0 1 0 4 Updated Feb 19, 2025
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