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Cleanup.
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MicheleBortol committed Aug 1, 2024
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11 changes: 4 additions & 7 deletions README.md
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Expand Up @@ -53,11 +53,10 @@ The plugin can be used with:
- `Open with` `->` `Vitessce` on the left side panel.

#### Right-hand-side panel:
- Prexisting config files:
- **Prexisting config files**:
![Right-Config](https://github.com/user-attachments/assets/b8fea5f0-1d8f-4578-a577-8744d32dcaa5)
Clicking the link will open a new tab with the viewer displaying the selected configuration.

- Autogenerating config file:
- **Autogenerating config file**:
![Right-Auto](https://github.com/user-attachments/assets/8dfa22cc-dbb5-493d-b837-d609a11a1346)
Clicking the button will autogenerate a config file and attach it to the dataset/image, and the viewer displaying the autogenerated configuration.

Expand All @@ -76,10 +75,8 @@ The config files should follow the vitessce view-config-json format: http://vite

#### Autogenerated config files
Config files can be autogenerated for:
- images:
A spatial view and a layer controller view are setup for the image.
- datasets:
All images in the dataset are bundled togheter and a spatial view and a layer controller are setup.
- `images`: A spatial view and a layer controller view are setup for the image.
- `datasets`: All images in the dataset are bundled togheter and a spatial view and a layer controller are setup.

Assumes that the images are in the OME-NGFF format v0.4 and that [omero-web-zarr](https://github.com/ome/omero-web-zarr) is
available to serve the images.
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