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Merge pull request #308 from mbeckste/patch-1
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Update 02-toolsurvey.md
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KK-NFDI authored Feb 5, 2025
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Expand Up @@ -18,6 +18,7 @@ In the meantime, browse our tools below and find more [recommendations for resou

## Applications
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### checkM2 (EMBL)

Assessing the quality of metagenome-derived genome bins using machine learning
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Link: [https://github.com/chklovski/CheckM2](https://github.com/chklovski/CheckM2)

### The Cloud-based Workflow Manager - CloWM (BIBI)
The Cloud-based Workflow Manager (CloWM /klaʊm/) offers the seamless integration of (1) curated, scientific workflows written in the Nextflow DSL, (2) robust data storage, (3) a highly scalable compute layer for data-intensive analysis tasks and a (4) user-friendly interface. The CloWM platform is completely open-source and can be used free-of-charge.
The CloWM platform already contains several curated, best-practice workflows that cover a broad range of research fields/tasks, such as metagenomics (WGS and 16S), human-variation-analysis, infectious diseases (SARS-CoV2, Mpox, Influenza A+B), meta-barcoding, genome assembly, transcriptomics, basecalling, phylogenomics, …
Some of these workflows are exclusively available on CloWM.

operating system: Platform independent

License: [Apache 2](https://www.apache.org/licenses/LICENSE-2.0.txt)

Link: [https://clowm.bi.denbi.de](https://clowm.bi.denbi.de)

### Eggnog mapper (EMBL)

Fast genome-wide functional annotation through orthology assignment
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