Refactor of patch and cohort objects#1024

Merged

glemieux merged 80 commits intoNGEET:mainfrom adrifoster:patch_refactor

Aug 8, 2023

+3,537-3,458

Commits on Apr 3, 2023

move cohort to its own module
adrifoster
committed

Commits on Apr 4, 2023

initial refactor of cohort type
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Commits on Apr 5, 2023

more refactoring
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moving parameters around
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Merge branch 'main' into unit_test_framework
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Commits on Apr 7, 2023

move cohort type into its own module
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remove unused dependencies
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move more subroutines to cohort type
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move more methods to cohort type
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committed

Commits on Apr 10, 2023

move patch type to its own module
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move create methods to patch type
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move more methods to patch type
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Commits on Apr 11, 2023

add allocate statement
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add unit testing folder
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update io methods for unit testing
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adding makefile
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move structure around to facilitate cmake
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updates for making
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add Cmakelists
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Commits on Apr 12, 2023

update for making
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committed
more updates for cmake
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move cmakelists
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works except for netcdf
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add testing functionality
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Commits on Apr 13, 2023

working for netcdf
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adding a namelist
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accidentally added build
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Commits on Apr 14, 2023

updates to add more modules
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move test directories
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trying to get share to work
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rearranging structure
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working now
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Commits on Apr 21, 2023

more cmake stuff
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committed

Commits on Apr 24, 2023

put use statements back
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Commits on Apr 27, 2023

trying to add parameters
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committed

Commits on May 2, 2023

update unit test
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update unit test
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just refactor stuff
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committed

Commits on May 4, 2023

refactor copy and dealloc
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update for refactor
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fix circular dependencies with hydraulics objects
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Merge branch 'main' into patch_refactor
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Commits on May 5, 2023

get rid of CMakeLists, only for unit test branch
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put cohort mod in biogeochem folder
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Commits on May 8, 2023

put endrun back
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remove allocatable arrays
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add abort back
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add fragmentation scalar
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add shr_sys_abort use
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fragmentation scalar
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Commits on May 9, 2023

begin to update for style
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Merge branch 'patch_refactor_noallocate' into patch_refactor
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update style on patchmod
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update style to match style guide
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Commits on May 10, 2023

update for style
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Merge branch 'main' into patch_refactor
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add target
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Commits on May 15, 2023

get rid of temporary cohort allocation
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do_inventory_out off
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Commits on May 16, 2023

remove temp cohort
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update l2fr definition
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dangling pointer
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update to target
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fix crown_damage
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Commits on Jun 15, 2023

Merge branch 'main' into patch_refactor
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Commits on Jul 7, 2023

Merge branch 'main' into patch_refactor
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Commits on Jul 13, 2023

merge conflicts fix
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committed

Commits on Jul 26, 2023

Fix EDInitMod.F90 initialisation of drought deciduous variables

mpaiao
authored and
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committed
fix init error
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Remove duplicated init of the drought deciduous local variables

mpaiao
authored and
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committed
Merge commit '6d424f467a6236ff24c41be2143244ae0a43b2f8' into patch_refactor
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Merge commit '43d5e55480154e4bd487edd8da3f54e9c6bc4c42' into patch_refactor
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committed

Commits on Jul 27, 2023

Merge branch 'main' into patch_refactor
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remove default
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fix deallocate
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Commits on Jul 28, 2023

remove duplicate uses
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committed
address comments
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Update biogeochem/EDCohortDynamicsMod.F90

adrifoster
and
glemieux
authored

Commits on Aug 1, 2023

fix spmode cohort height initialization
glemieux
committed

Commits on Aug 7, 2023

remove duplicate calculation of leaf_c
glemieux
committed