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Update OBO foundry metadata #2666

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Dec 17, 2024
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Update OBO foundry metadata #2666

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40 changes: 34 additions & 6 deletions _config.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -799,9 +799,9 @@ ontologies:
label: Alexander Diehl
orcid: 0000-0001-9990-8331
dependencies:
- id: chebi
- id: go
- id: ncbitaxon
- id: omo
- id: pato
- id: pr
- id: ro
Expand Down Expand Up @@ -829,29 +829,57 @@ ontologies:
ontology_purl: http://purl.obolibrary.org/obo/cl.owl
title: Main CL OWL edition
uses:
- uberon
- chebi
- go
- pr
- pato
- ncbitaxon
- omo
- pato
- pr
- ro
- uberon
- derived_from: cl.owl
description: Complete ontology, plus inter-ontology axioms, and imports modules
merged in
format: obo
id: cl.obo
ontology_purl: http://purl.obolibrary.org/obo/cl.obo
title: CL obo format edition
- derived_from: cl.owl
description: Complete ontology, plus inter-ontology axioms, and imports modules
merged in
format: json
id: cl.json
ontology_purl: http://purl.obolibrary.org/obo/cl.json
title: CL OBOGraph-JSON format edition
- description: Basic version, no inter-ontology axioms
format: owl-rdf/xml
id: cl/cl-basic.owl
ontology_purl: http://purl.obolibrary.org/obo/cl/cl-basic.owl
title: Basic CL
- description: Basic version, no inter-ontology axioms
format: obo
id: cl/cl-basic.obo
ontology_purl: http://purl.obolibrary.org/obo/cl/cl-basic.obo
title: Basic CL
title: Basic CL (OBO version)
- description: Basic version, no inter-ontology axioms
format: json
id: cl/cl-basic.json
ontology_purl: http://purl.obolibrary.org/obo/cl/cl-basic.json
title: Basic CL (OBOGraph-JSON version)
- description: complete CL but with no imports or external axioms
format: owl-rdf/xml
id: cl/cl-base.owl
ontology_purl: http://purl.obolibrary.org/obo/cl/cl-base.owl
title: CL base module
- description: complete CL but with no imports or external axioms
format: obo
id: cl/cl-base.obo
ontology_purl: http://purl.obolibrary.org/obo/cl/cl-base.obo
title: CL base module (OBO version)
- description: complete CL but with no imports or external axioms
format: json
id: cl/cl-base.json
ontology_purl: http://purl.obolibrary.org/obo/cl/cl-base.json
title: CL base module (OBOGraph-JSON version)
publications:
- id: https://www.ncbi.nlm.nih.gov/pubmed/27377652
title: 'The Cell Ontology 2016: enhanced content, modularization, and ontology
Expand Down
55 changes: 46 additions & 9 deletions registry/ontologies.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -1088,15 +1088,15 @@
"orcid": "0000-0001-9990-8331"
},
"dependencies": [
{
"id": "chebi"
},
{
"id": "go"
},
{
"id": "ncbitaxon"
},
{
"id": "omo"
},
{
"id": "pato"
},
Expand Down Expand Up @@ -1134,13 +1134,13 @@
"ontology_purl": "http://purl.obolibrary.org/obo/cl.owl",
"title": "Main CL OWL edition",
"uses": [
"uberon",
"chebi",
"go",
"pr",
"pato",
"ncbitaxon",
"ro"
"omo",
"pato",
"pr",
"ro",
"uberon"
]
},
{
Expand All @@ -1151,18 +1151,55 @@
"ontology_purl": "http://purl.obolibrary.org/obo/cl.obo",
"title": "CL obo format edition"
},
{
"derived_from": "cl.owl",
"description": "Complete ontology, plus inter-ontology axioms, and imports modules merged in",
"format": "json",
"id": "cl.json",
"ontology_purl": "http://purl.obolibrary.org/obo/cl.json",
"title": "CL OBOGraph-JSON format edition"
},
{
"description": "Basic version, no inter-ontology axioms",
"format": "owl-rdf/xml",
"id": "cl/cl-basic.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-basic.owl",
"title": "Basic CL"
},
{
"description": "Basic version, no inter-ontology axioms",
"format": "obo",
"id": "cl/cl-basic.obo",
"ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-basic.obo",
"title": "Basic CL"
"title": "Basic CL (OBO version)"
},
{
"description": "Basic version, no inter-ontology axioms",
"format": "json",
"id": "cl/cl-basic.json",
"ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-basic.json",
"title": "Basic CL (OBOGraph-JSON version)"
},
{
"description": "complete CL but with no imports or external axioms",
"format": "owl-rdf/xml",
"id": "cl/cl-base.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-base.owl",
"title": "CL base module"
},
{
"description": "complete CL but with no imports or external axioms",
"format": "obo",
"id": "cl/cl-base.obo",
"ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-base.obo",
"title": "CL base module (OBO version)"
},
{
"description": "complete CL but with no imports or external axioms",
"format": "json",
"id": "cl/cl-base.json",
"ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-base.json",
"title": "CL base module (OBOGraph-JSON version)"
}
],
"publications": [
Expand Down
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