Merge pull request #3 from OceanBioME/ncc/use-tagged-climaocean

Use ClimaOcean v0.1.2

Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.10.2"
 manifest_format = "2.0"
-project_hash = "2dae6acd5bdaeb7779eb12726acce00000976d59"
+project_hash = "a11bd35eacf50dcbd249e737005bed224ecc31c4"
 
 [[deps.AbstractFFTs]]
 deps = ["LinearAlgebra"]
@@ -38,9 +38,9 @@ version = "0.1.36"
 
 [[deps.Adapt]]
 deps = ["LinearAlgebra", "Requires"]
-git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608"
+git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099"
 uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.7.2"
+version = "4.0.4"
 weakdeps = ["StaticArrays"]
 
     [deps.Adapt.extensions]
@@ -51,24 +51,28 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
 version = "1.1.1"
 
 [[deps.ArrayInterface]]
-deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75"
+deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"]
+git-tree-sha1 = "44691067188f6bd1b2289552a23e4b7572f4528d"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "7.7.1"
+version = "7.9.0"
 
     [deps.ArrayInterface.extensions]
     ArrayInterfaceBandedMatricesExt = "BandedMatrices"
     ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices"
     ArrayInterfaceCUDAExt = "CUDA"
+    ArrayInterfaceChainRulesExt = "ChainRules"
     ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore"
+    ArrayInterfaceReverseDiffExt = "ReverseDiff"
     ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore"
     ArrayInterfaceTrackerExt = "Tracker"
 
     [deps.ArrayInterface.weakdeps]
     BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
     BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0"
     CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
+    ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2"
     GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527"
+    ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
     StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
     Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
 
@@ -119,10 +123,10 @@ uuid = "179af706-886a-5703-950a-314cd64e0468"
 version = "0.1.3"
 
 [[deps.CUDA]]
-deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "Statistics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "95ac638373ac40e29c1b6d086a3698f5026ff6a6"
+deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"]
+git-tree-sha1 = "baa8ea7a1ea63316fa3feb454635215773c9c845"
 uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
-version = "5.1.2"
+version = "5.2.0"
 weakdeps = ["ChainRulesCore", "SpecialFunctions"]
 
     [deps.CUDA.extensions]
@@ -143,9 +147,9 @@ version = "0.2.3"
 
 [[deps.CUDA_Runtime_jll]]
 deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "9704e50c9158cf8896c2776b8dbc5edd136caf80"
+git-tree-sha1 = "8e25c009d2bf16c2c31a70a6e9e8939f7325cc84"
 uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
-version = "0.10.1+0"
+version = "0.11.1+0"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra"]
@@ -159,11 +163,11 @@ weakdeps = ["SparseArrays"]
 
 [[deps.ClimaOcean]]
 deps = ["CUDA", "CubicSplines", "DataDeps", "Downloads", "JLD2", "KernelAbstractions", "NCDatasets", "Oceananigans", "Printf", "SeawaterPolynomials", "Statistics"]
-git-tree-sha1 = "ce0b767a724851615c4ecbd883756a5e5abf8489"
-repo-rev = "jsw/add-biogeochemistry-interface"
-repo-url = "https://github.com/jagoosw/ClimaOcean.jl"
+git-tree-sha1 = "34c1548712d6491ecf53c721c38a6d1b3e295a8c"
+repo-rev = "v0.1.2"
+repo-url = "https://github.com/CliMA/ClimaOcean.jl.git"
 uuid = "0376089a-ecfe-4b0e-a64f-9c555d74d754"
-version = "0.1.0"
+version = "0.1.2"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
@@ -373,15 +377,15 @@ version = "6.2.1+6"
 
 [[deps.GPUArrays]]
 deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
-git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1"
+git-tree-sha1 = "47e4686ec18a9620850bad110b79966132f14283"
 uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
-version = "9.1.0"
+version = "10.0.2"
 
 [[deps.GPUArraysCore]]
 deps = ["Adapt"]
-git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0"
+git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950"
 uuid = "46192b85-c4d5-4398-a991-12ede77f4527"
-version = "0.1.5"
+version = "0.1.6"
 
 [[deps.GPUCompiler]]
 deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"]
@@ -408,9 +412,9 @@ version = "1.14.2+1"
 
 [[deps.HTTP]]
 deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
-git-tree-sha1 = "995f762e0182ebc50548c434c171a5bb6635f8e4"
+git-tree-sha1 = "8e59b47b9dc525b70550ca082ce85bcd7f5477cd"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "1.10.4"
+version = "1.10.5"
 
 [[deps.Hwloc_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -520,9 +524,9 @@ version = "0.9.18"
 
 [[deps.LLVM]]
 deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"]
-git-tree-sha1 = "7c6650580b4c3169d9905858160db895bff6d2e2"
+git-tree-sha1 = "ab01dde107f21aa76144d0771dccc08f152ccac7"
 uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
-version = "6.6.1"
+version = "6.6.2"
 weakdeps = ["BFloat16s"]
 
     [deps.LLVM.extensions]
@@ -745,9 +749,9 @@ version = "1.2.0"
 
 [[deps.OceanBioME]]
 deps = ["Adapt", "CUDA", "JLD2", "KernelAbstractions", "Oceananigans", "Roots", "StructArrays"]
-git-tree-sha1 = "d8536c7f6395422679bfb3934718812f0992c6a5"
+git-tree-sha1 = "a8261c98bb2a03df5458451bc4031713fb8cc944"
 uuid = "a49af516-9db8-4be4-be45-1dad61c5a376"
-version = "0.10.0"
+version = "0.10.1"
 
 [[deps.Oceananigans]]
 deps = ["Adapt", "CUDA", "Crayons", "CubedSphere", "Dates", "Distances", "DocStringExtensions", "FFTW", "Glob", "IncompleteLU", "InteractiveUtils", "IterativeSolvers", "JLD2", "KernelAbstractions", "LinearAlgebra", "Logging", "MPI", "NCDatasets", "OffsetArrays", "OrderedCollections", "PencilArrays", "PencilFFTs", "Pkg", "Printf", "Random", "Rotations", "SeawaterPolynomials", "SparseArrays", "Statistics", "StructArrays"]
@@ -1172,9 +1176,9 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
 version = "0.5.23"
 
 [[deps.TranscodingStreams]]
-git-tree-sha1 = "a09c933bebed12501890d8e92946bbab6a1690f1"
+git-tree-sha1 = "14389d51751169994b2e1317d5c72f7dc4f21045"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.10.5"
+version = "0.10.6"
 weakdeps = ["Random", "Test"]
 
     [deps.TranscodingStreams.extensions]

Project.toml

@@ -1,6 +1,6 @@
 name = "GlobalOceanBioME"
 uuid = "6721f89c-e0db-41b8-bcae-ef5166b5aae6"
-authors = ["Jago Stong-Wright <[email protected]>"]
+authors = ["Jago Stong-Wright <[email protected]> and OceanBioME contributors"]
 version = "0.1.0"
 
 [deps]
@@ -12,4 +12,5 @@ OceanBioME = "a49af516-9db8-4be4-be45-1dad61c5a376"
 Oceananigans = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09"
 
 [compat]
-OceanBioME = "0.10"
+ClimaOcean = "0.1.2"
+OceanBioME = "0.10.1"