v1.1.0
What's Changed
- Update Snakefile by @tovahmarkowitz in #30
- add blocking to the diffbind csv prep by @tovahmarkowitz in #35
- Adding new DiffBind QC Rmd for cfChIP and a few other DiffBind updates by @tovahmarkowitz in #36
- Adding new DiffBindQC for cfChIP by @tovahmarkowitz in #37
- Adding memory for diffbind jobs by @tovahmarkowitz in #38
- Updates to CI include every major permutation of running the ChIP-, cfChIP-, and ATAC-seq pipelines @skchronicles
- Updates to documentation to include FAQ and description/overview of pipeline and its different types of output files @tovahmarkowitz @skchronicles
- Re-building cfChIP docker image to include additional R packages @skchronicles
- Adding MEME to pipeline @tovahmarkowitz
- Adding spearman heatmap and PCA plots @tovahmarkowitz
- Updates to handle single-end data @tovahmarkowitz
- Updates to handle ChIP-seq data/processing lacking input control samples @tovahmarkowitz
Full Changelog: v1.0.2...v1.1.0
Contributors
skchronicles and tovahmarkowitz