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v1.6.0

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@dportik dportik released this 12 Jan 18:51
· 68 commits to master since this release

Major changes:

  • Added Taxonomic-Profiling-Sourmash workflow (all credit to @bluegenes !) .
  • Consolidated existing profiling workflows.
    • Taxonomic-Profiling-Diamond-Megan is the combined workflow of Taxonomic-Functional-Profiling-Protein + MEGAN-RMA-Summary.
    • Taxonomic-Profiling-Minimap-Megan is the combined workflow of Taxonomic-Profiling-Nucleotide + MEGAN-RMA-Summary.
  • Added new binning methods to the custom strategy in HiFi-MAG-Pipeline, including CONCOCT and MaxBin2.
  • Updated all relevant documentation and images.

Minor changes:

  • Taxonomic-Profiling-Minimap-Megan: Added filtered & unfiltered versions of RMA file, using the --minSupportPercent 0.01 flag in sam2rma. Allows filtered & unfiltered taxonomic report outputs.
  • HiFi-MAG-Pipeline: Set minimum contig size for binning to 50000 across all binning methods (MetaBAT2, CONCOCT, MaxBin2).
  • HiFi-MAG-Pipeline: Updated GTDB-TK requirement to v2.1.1.