v1.6.0
Major changes:
- Added Taxonomic-Profiling-Sourmash workflow (all credit to @bluegenes !) .
- Consolidated existing profiling workflows.
- Taxonomic-Profiling-Diamond-Megan is the combined workflow of
Taxonomic-Functional-Profiling-Protein
+MEGAN-RMA-Summary
. - Taxonomic-Profiling-Minimap-Megan is the combined workflow of
Taxonomic-Profiling-Nucleotide
+MEGAN-RMA-Summary
.
- Taxonomic-Profiling-Diamond-Megan is the combined workflow of
- Added new binning methods to the custom strategy in HiFi-MAG-Pipeline, including
CONCOCT
andMaxBin2
. - Updated all relevant documentation and images.
Minor changes:
- Taxonomic-Profiling-Minimap-Megan: Added filtered & unfiltered versions of RMA file, using the
--minSupportPercent 0.01
flag insam2rma
. Allows filtered & unfiltered taxonomic report outputs. - HiFi-MAG-Pipeline: Set minimum contig size for binning to
50000
across all binning methods (MetaBAT2
,CONCOCT
,MaxBin2
). - HiFi-MAG-Pipeline: Updated GTDB-TK requirement to v2.1.1.