[not for merge] DESC release branch #4350
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| name: Parsl | |
| on: | |
| pull_request: | |
| types: | |
| - opened | |
| - synchronize | |
| merge_group: | |
| jobs: | |
| main-test-suite: | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| runs-on: ubuntu-20.04 | |
| timeout-minutes: 60 | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Collect Job Information | |
| id: job-info | |
| run: | | |
| echo "Python Version: ${{ matrix.python-version }}" >> ci_job_info.txt | |
| echo "CI Triggering Event: ${{ github.event_name }}" >> ci_job_info.txt | |
| echo "Triggering Git Ref: ${{ github.ref }}" >> ci_job_info.txt | |
| echo "Triggering Git SHA: ${{ github.sha }}" >> ci_job_info.txt | |
| echo "Workflow Run: ${{ github.run_number }}" >> ci_job_info.txt | |
| echo "Workflow Attempt: ${{ github.run_attempt }}" >> ci_job_info.txt | |
| as_ascii="$(echo "${{ github.ref_name }}" | perl -pe "s/[^A-z0-9-]+/-/g; s/^-+|-+\$//g; s/--+/-/g;")" | |
| echo "as-ascii=$as_ascii" >> $GITHUB_OUTPUT | |
| - name: Non-requirements based install | |
| run: | | |
| # libpython3.5: make workqueue binary installer happy | |
| # mpich: required by radical executor | |
| sudo apt-get update -q | |
| sudo apt-get install -qy libpython3.5 mpich | |
| - name: setup virtual env | |
| run: | | |
| make virtualenv | |
| source .venv/bin/activate | |
| - name: make deps clean_coverage | |
| run: | | |
| source .venv/bin/activate | |
| make deps | |
| make clean_coverage | |
| - name: make test | |
| run: | | |
| source .venv/bin/activate | |
| # temporary; until test-matrixification | |
| export PARSL_TEST_PRESERVE_NUM_RUNS=7 | |
| make test | |
| ln -s pytest-parsl/parsltest-current test_runinfo | |
| - name: Documentation checks | |
| run: | | |
| source .venv/bin/activate | |
| pip install .[docs] | |
| sudo apt-get install -y pandoc | |
| cd docs | |
| test ! -e stubs | |
| # check we can build the docs without warnings | |
| PYTHONPATH=/tmp/cctools/lib/python3.8/site-packages make SPHINXOPTS=-W html | |
| cd .. | |
| # assert that none of the runs in this test have put an ERROR message into a | |
| # database manager log file or monitoring router log file. It would be better if | |
| # the tests themselves failed immediately when there was a monitoring error, but | |
| # in the absence of that, this is a dirty way to check. | |
| bash -c '! grep ERROR pytest-parsl/parsltest-current/runinfo*/*/database_manager.log' | |
| bash -c '! grep ERROR pytest-parsl/parsltest-current/runinfo*/*/monitoring_router.log' | |
| # temporary; until test-matrixification | |
| rm -f pytest-parsl/parsltest-current test_runinfo | |
| - name: Checking parsl-visualize | |
| run: | | |
| source .venv/bin/activate | |
| sudo apt-get install -y graphviz | |
| pip install .[monitoring,visualization] | |
| parsl/tests/test-viz.sh | |
| # config_local_test comes after viz so that the large monitoring.db | |
| # created by `make test` is still around | |
| - name: make config_local_test | |
| run: | | |
| source .venv/bin/activate | |
| make config_local_test | |
| - name: make coverage | |
| run: | | |
| source .venv/bin/activate | |
| make coverage | |
| - name: Archive runinfo logs | |
| if: ${{ always() }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: runinfo-${{ matrix.python-version }}-${{ steps.job-info.outputs.as-ascii }}-${{ github.sha }} | |
| path: | | |
| runinfo/ | |
| pytest-parsl/ | |
| ci_job_info.txt | |
| compression-level: 9 | |
| gen3: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest ] | |
| py: [ "3.11" ] | |
| CC: [ gcc ] | |
| CXX: [ g++ ] | |
| defaults: | |
| run: | |
| # cf. https://github.com/conda-incubator/setup-miniconda#important | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| repository: LSSTDESC/gen3_workflow | |
| - uses: actions/checkout@master | |
| with: | |
| path: ./parsl-repo | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: stack | |
| python-version: "3.11" | |
| condarc-file: etc/.condarc | |
| - name: Install conda deps | |
| run: | | |
| conda info | |
| conda list | |
| conda install -y mamba | |
| mamba install -y --file conda_requirements.txt | |
| conda info | |
| conda list | |
| - name: Install workflow packages | |
| run: | | |
| # pip install -U --no-deps 'parsl[monitoring,workqueue] @ git+https://github.com/parsl/parsl@desc' | |
| pip install -U --no-deps './parsl-repo[monitoring,workqueue]' | |
| pip install typeguard tblib paramiko dill pyzmq globus-sdk sqlalchemy_utils | |
| conda install -c conda-forge ndcctools=7.6.1=py311h689c632_0 --no-deps | |
| - name: Clone gen3_workflow checkout the branch | |
| shell: bash -l {0} | |
| run: | | |
| echo pwd | |
| pwd | |
| echo ls | |
| ls | |
| echo Cloning gen3_workflow repo | |
| git clone https://github.com/LSSTDESC/gen3_workflow | |
| echo declaring gen3_workflow to eups | |
| eups declare gen3_workflow -r ${PWD}/gen3_workflow -t current | |
| cd gen3_workflow | |
| git fetch origin master:TESTING | |
| git checkout TESTING | |
| - name: Run the test pipelines | |
| run: | | |
| setup gen3_workflow | |
| (eups list lsst_distrib) 2>&1 | grep -v "Unknown tag" | |
| (eups list gen3_workflow) 2>&1 | grep -v "Unknown tag" | |
| cd tests | |
| pytest test_query_workflow.py test_bps_restart.py | |
| - name: Archive test logs | |
| if: ${{ always() }} | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: testinfo-${{ matrix.python-version }} | |
| path: gen3_workflow/ | |