Add abstracts, typo in download url variable.

PathwayCommons · Oct 15, 2024 · 198c4d7 · 198c4d7
1 parent 38788dd
commit 198c4d7
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Showing 4 changed files with 14 additions and 13 deletions.
diff --git a/.vscode/launch.json b/.vscode/launch.json
@@ -43,11 +43,10 @@
       "args": [
         "download",
         "--output",
-        "example-data/2022-06-22.json",
-        "2022-06-22",
-        "2022-06-22"
-      ],
-      "console": "integratedTerminal"
+        "example-data/2024-08-01_2024-10-011.json",
+        "2024-08-01",
+        "2024-10-11"
+      ]
     },
     {
       "type": "node",
@@ -60,11 +59,12 @@
       "args": [
         "search",
         "--input",
-        "example-data/2022-06-22.json",
-        "breast cancer",
-        "--pretty"
-      ],
-      "console": "integratedTerminal"
+        "example-data/2024-08-01_2024-10-011.json",
+        "--output",
+        "example-data/2024-08-01_2024-10-011-alzheimer.json",
+        "alzheimer"
+        // "--pretty"
+      ]
     },
     {
       "type": "node",
@@ -83,7 +83,7 @@
       "skipFiles": [
         "<node_internals>/**"
       ],
-      "program": "${workspaceFolder}/src/dashboard/app.js", 
+      "program": "${workspaceFolder}/src/dashboard/app.js",
       "console": "integratedTerminal"
     }
   ]

diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -1,6 +1,6 @@
 {
   "editor.codeActionsOnSave": {
-    "source.fixAll.eslint": true
+    "source.fixAll.eslint": "explicit"
   },
   "editor.tabSize": 2,
   "editor.insertSpaces": true

diff --git a/src/cli.js b/src/cli.js
@@ -106,6 +106,7 @@ async function formatData (dataArray) {
   try {
     const formattedData = dataArray.map(article => ({
       paperId: article.doi,
+      abstract: article.abstract,
       doi: article.doi,
       title: article.title,
       journal: article.server,

diff --git a/src/download.js b/src/download.js
@@ -131,7 +131,7 @@ async function getRecent (server, N, opts) { // eslint-disable-line no-unused-va
 async function getDateRange (server, start, end, offset = 0, opts) {
   validateDate(start);
   validateDate(end);
-  const url = `${CONTENT_DETAIL_BASE_URL}/${server}/${start}/${end}/${offset}/json`;
+  const url = `${CONTENT_DETAIL_BASE_URL}${server}/${start}/${end}/${offset}/json`;
   return getNormalized(url, opts);
 };