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@PedroMTQ PedroMTQ released this 13 May 07:42
· 186 commits to master since this release
1.1
8060c08

Added Diamond support, the user can now add sequences and use those as reference. Mantis now has HMMER and Diamond integration, hits coming from either homology search tool are used.

Added CDS translation of RNA and DNA to protein sequences. The user can provide a genetic code (default 11) when running Mantis with -gc

Added reference weight for heuristic and bpo algorithms (previously only dfs supported this)

Added a transporter reference database (TCDB)

Added cores variable to setup_databases

Added kill_switch instead of using Exceptions (clearer traceback)

Changed output and variables nomenclature to be more agnostic (HMM -> reference)

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