Update.

PennLINC · Jan 28, 2025 · aa1c42e · aa1c42e
1 parent 264824c
commit aa1c42e
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Showing 2 changed files with 10 additions and 1 deletion.
diff --git a/cubids/cubids.py b/cubids/cubids.py
@@ -91,6 +91,8 @@ class CuBIDS(object):
         A data dictionary for TSV outputs.
     use_datalad : :obj:`bool`
         If True, use datalad to track changes to the BIDS dataset.
+    schema : :obj:`dict`
+        The BIDS schema dictionary.
     is_longitudinal : :obj:`bool`
         If True, adds "ses" in filepath.
     """

diff --git a/cubids/workflows.py b/cubids/workflows.py
@@ -334,7 +334,7 @@ def bids_sidecar_merge(from_json, to_json):
     sys.exit(merge_status)
 
 
-def group(bids_dir, container, acq_group_level, config, output_prefix):
+def group(bids_dir, container, acq_group_level, config, schema, output_prefix):
     """Find key and param groups.
 
     Parameters
@@ -347,6 +347,8 @@ def group(bids_dir, container, acq_group_level, config, output_prefix):
         Level at which acquisition groups are created.
     config : :obj:`pathlib.Path`
         Path to the grouping config file.
+    schema : :obj:`pathlib.Path`
+        Path to the BIDS schema file.
     output_prefix : :obj:`pathlib.Path`
         Output filename prefix.
     """
@@ -356,6 +358,7 @@ def group(bids_dir, container, acq_group_level, config, output_prefix):
             data_root=str(bids_dir),
             acq_group_level=acq_group_level,
             grouping_config=config,
+            schema_json=schema,
         )
         bod.get_tsvs(
             str(output_prefix),
@@ -428,6 +431,7 @@ def apply(
     use_datalad,
     acq_group_level,
     config,
+    schema,
     edited_summary_tsv,
     files_tsv,
     new_tsv_prefix,
@@ -445,6 +449,8 @@ def apply(
         Level at which acquisition groups are created.
     config : :obj:`pathlib.Path`
         Path to the grouping config file.
+    schema : :obj:`pathlib.Path`
+        Path to the BIDS schema file.
     edited_summary_tsv : :obj:`pathlib.Path`
         Path to the edited summary tsv.
     files_tsv : :obj:`pathlib.Path`
@@ -461,6 +467,7 @@ def apply(
             use_datalad=use_datalad,
             acq_group_level=acq_group_level,
             grouping_config=config,
+            schema_json=schema,
         )
         if use_datalad:
             if not bod.is_datalad_clean():