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Update sdcflows requirement from ~=2.7.0 to ~=2.8.0 #384

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@dependabot dependabot bot commented on behalf of github Jan 15, 2024

Updates the requirements on sdcflows to permit the latest version.

Changelog

Sourced from sdcflows's changelog.

2.8.0 (January 10, 2024)

New feature release in the 2.8.0 series.

This release fixes a bug in converting SyN-SDC displacements to fieldmaps, resulting in exaggerated corrections. As this makes changes to the structure of a workflow and the expected inputs of a workflow node, this release is considered a minor release.

  • FIX: Derive field from SyN displacements using EPI affine (#421)
  • FIX: Change os.basename to os.path.basename (#419)
  • DOC: Add @​smeisler to contributors (#420)

2.7.0 (December 18, 2023)

New feature release in the 2.7.0 series.

This release includes an updated CLI, which allows sdcflows to be run as a BIDS App. To achieve the previous behavior of sdcflows-find-estimators, use the -n flag.

Addtional bug fixes and enhancements are included.

  • FIX: Drop header before resampling image to avoid unsafe cast (#415)
  • FIX: Wrangler now ignores part-phase EPI files (#407)
  • ENH: Standalone CLI now estimates fieldmaps (#408)
  • ENH: Add support for ASL data (#411)
  • ENH: Enable rendering of the Jupyter notebooks (#409)
  • MNT: Migrate to PEP517/518 packaging (#410)
  • CI: bump actions/setup-python from 4 to 5 (#412)
  • CI: bump conda-incubator/setup-miniconda from 2 to 3 (#406)

2.6.0 (November 10, 2023)

New feature release in the 2.6.0 series.

This release resolves a number of issues with fieldmaps inducing distortions during correction. Phase difference and direct fieldmaps are now masked correctly, preventing the overestimation of distortions outside the brain. Additionally, we now implement Jacobian weighting during unwarping, which corrects for compression and expansion effects on signal intensity.

  • FIX: Mask fieldmap before fitting spline field (#396)
  • FIX: Interpolate to floating point values (#394)
  • FIX: Refactoring the B0FieldTransform implementation (#346)
  • FIX: Nipype workflows like to be passed absolute paths (phasediff fieldmap) (#374)
  • ENH: Implement Jacobian weighting during unwarp (#391)
  • ENH: Output target2fmap_xfm from coeff2epi_wf (#381)
  • ENH: Add data loader to sdcflows.data, drop pkg_resources (#379)
  • RF: Use scipy.interpolate.BSpline to construct spline basis (#393)

... (truncated)

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Updates the requirements on [sdcflows](https://github.com/nipreps/sdcflows) to permit the latest version.
- [Release notes](https://github.com/nipreps/sdcflows/releases)
- [Changelog](https://github.com/nipreps/sdcflows/blob/master/CHANGES.rst)
- [Commits](nipreps/sdcflows@2.7.0...2.8.0)

---
updated-dependencies:
- dependency-name: sdcflows
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added ignore-for-release PRs that shouldn't be included with release notes. maintenance Issues/PRs related to maintenance. Dependency versions, dependencies, etc. labels Jan 15, 2024
@tsalo
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tsalo commented Jan 15, 2024

Closing in favor of #385.

@tsalo tsalo closed this Jan 15, 2024
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dependabot bot commented on behalf of github Jan 15, 2024

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.

@dependabot dependabot bot deleted the dependabot/pip/sdcflows-approx-eq-2.8.0 branch January 15, 2024 15:38
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