Jones matrix multiplication loop #104
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New retardance images with updates python packages should be generated
Now the pytorch simulations are faster, particularly on the GPU. The matrix multiplication still need to be done in a loop because it is not a commutative operation. Updated time stamp labels now that a loop is removed. Adjusting jones matrix function to account for the new dimensions of tensors. Removed duplicate numpy array saving function.
Solves cluttering of log files
Removed rays_with_voxels computation to save on memory
Parameters are no longer necessary for python 3
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