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  1. FIJI-Segmentor-Macro FIJI-Segmentor-Macro Public

    A semi manual segmentation FIJI macro for fluorescence bioimaging data.

    1

  2. Herpesfolds Herpesfolds Public

    Code used for our Herpesfolds database

    Python 1

  3. Trackmate_Batch Trackmate_Batch Public

    A batch adopted version of Trackmate

  4. FIJI-Measurement-Analyzer FIJI-Measurement-Analyzer Public

    This notebook allows the analysis of measurements from the Fiji-Segmentor plugin

    Jupyter Notebook

  5. Matlab-Trackmate-MSD Matlab-Trackmate-MSD Public

    This Matlab script allows quick batch analysis of Trackmate data with the MSD analyzer class.

    MATLAB 3

  6. 2D-Colocalization 2D-Colocalization Public

    This is a simple Jupyter notebook that creates a 2D heatmap to show colocalization between two fluorescence images.

    Jupyter Notebook