making a couple env vars optional, adding name res endpoint as an env…

… var

Common/build_manager.py

@@ -436,7 +436,7 @@ def get_graph_dir_path(self, graph_id: str, graph_version: str):
         return os.path.join(self.graphs_dir, graph_id, graph_version)
 
     def get_graph_output_URL(self, graph_id: str, graph_version: str):
-        graph_output_url = os.environ['ORION_OUTPUT_URL']
+        graph_output_url = os.environ.get('DATA_SERVICES_OUTPUT_URL', "https://localhost/")
         if graph_output_url[-1] != '/':
             graph_output_url += '/'
         return f'{graph_output_url}{graph_id}/{graph_version}/'

Common/neo4j_tools.py

@@ -19,7 +19,7 @@ def __init__(self,
         self.http_port = http_port
         self.https_port = https_port
         self.bolt_port = bolt_port
-        self.password = password if password else os.environ['ORION_NEO4J_PASSWORD']
+        self.password = password if password else os.environ.get('ORION_NEO4J_PASSWORD', 'orion-password')
         self.graph_db_uri = f'bolt://{neo4j_host}:{bolt_port}'
         self.graph_db_auth = ("neo4j", self.password)
         self.neo4j_driver = neo4j.GraphDatabase.driver(self.graph_db_uri, auth=self.graph_db_auth)

set_up_test_env.sh

@@ -22,14 +22,12 @@ export ORION_GRAPH_SPEC=testing-graph-spec.yml
 #ORION_GRAPH_SPEC_URL - a URL pointing to a Graph Spec file
 #export ORION_GRAPH_SPEC_URL=https://raw.githubusercontent.com/RENCI-AUTOMAT/ORION/helm_deploy/graph_specs/yeast-graph-spec.yml
 
-export ORION_NEO4J_PASSWORD=insecurepasswordexample
+export PYTHONPATH="$PYTHONPATH:$PWD"
 
-export ORION_OUTPUT_URL=https://localhost/
 
 #The following environment variables are optional
 export EDGE_NORMALIZATION_ENDPOINT=https://bl-lookup-sri.renci.org/
 export NODE_NORMALIZATION_ENDPOINT=https://nodenormalization-sri.renci.org/
-
+export NAME_RESOLVER_ENDPOINT=https://name-resolution-sri.renci.org/
+export ORION_OUTPUT_URL=https://localhost/  # this is currently only used to generate metadata
 export BL_VERSION=4.1.6
-
-export PYTHONPATH="$PYTHONPATH:$PWD"