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updating histone modification go term (the old one was obsoleted)
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EvanDietzMorris committed Feb 5, 2024
1 parent 8caa33b commit a7b53d9
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions parsers/yeast/src/loadHistoneMap.py
Original file line number Diff line number Diff line change
Expand Up @@ -202,9 +202,9 @@ def fetch_histone_data(self,
'H4K8ac': None, 'H4R3me': None, 'H4R3me2s': None, 'HTZ1': None}

# Will continue to work on this mapping.
# Get descendants of GO term "histone modification" (GO:0016570)
# Get descendants of GO term "histone modifying activity" (GO:0140993)
HisModDescendants = rq.get(
f"https://www.ebi.ac.uk/QuickGO/services/ontology/go/terms/{'GO:0016570'}/descendants").json()
f"https://www.ebi.ac.uk/QuickGO/services/ontology/go/terms/GO:0140993/descendants").json()
descendants = str(HisModDescendants['results'][0]['descendants']).replace("'", "").replace(" ", "").replace(
"[", "").replace("]", "")
descendantNames = rq.get(f"https://www.ebi.ac.uk/QuickGO/services/ontology/go/terms/{descendants}").json()
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