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SACGF / variantgrid Public

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Dave Lawrence edited this page Oct 14, 2020 · 1 revision

TODO:

AWS
Nectar
NCI

Toggle table of contents Pages 60

Home
Analysis Grid Columns
Analysis Nodes
Annotation Column Versions
Classification Import
ClinVar Export
Clone a VM
Coding Style
Cohort Genotype Common Filters
Customising appearance
Data partitioning
Database backup and restore
Developer Setup and Tips
Download Transcript Version Data
Gene and Transcript Version Data
Generating Transcript Version Data
Genotype Queries
HGVS cDNA and genomic coordinate conversion
HTML Template Style guide
Install
Install Annotation
Install bcftools liftover
Install from database dump
Install on MacOS
Install ped_parser and Madeline2
Install Postfix
Install Python venv
Install system services
Install VEP
Keycloak Integration
Keycloak Setup
Lab Maps
LDAP Setup
Licence discussion
Liftover
Moving Redis Postgres directories to different disks
Project history
Put up database dump
Raising Issues
Run VariantGrid
Settings
System Overview
Testing
Transcript Versions and Python HGVS library discussion
Troubleshooting
Unit testing DataTable grids
Upgrading
URL Menu configuration
User Lab Assignment
Users
Users, permissions and groups
Variant Annotation
Variant Annotation adding new columns
Variants and Alleles
VCF chromosome contig names
VCF import
VEP
VEP annotation data manual download
VEP Troubleshooting
Web CSS Style Guide

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